Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0940 and Dsui_0941 are separated by 152 nucleotides Dsui_0941 and Dsui_0942 are separated by 153 nucleotides Dsui_0942 and Dsui_0943 are separated by 333 nucleotides
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Dsui_0941: Dsui_0941 - nitrogenase-associated protein, at 970,215 to 970,643
_0941
Dsui_0942: Dsui_0942 - hypothetical protein, at 970,797 to 971,366
_0942
Dsui_0943: Dsui_0943 - nitrogenase cofactor biosynthesis protein NifB, at 971,700 to 973,223
_0943
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.978 kb on - strand at 969.983 kb on - strand at 969.998 kb on + strand at 970.121 kb on - strand at 970.337 kb on + strand at 970.414 kb on + strand, within Dsui_0941 at 970.434 kb on - strand at 970.469 kb on + strand, within Dsui_0941 at 970.581 kb on - strand, within Dsui_0941 at 970.853 kb on - strand at 970.954 kb on + strand, within Dsui_0942 at 970.962 kb on - strand, within Dsui_0942 at 970.977 kb on + strand, within Dsui_0942 at 971.009 kb on + strand, within Dsui_0942 at 971.038 kb on + strand at 971.104 kb on - strand, within Dsui_0942 at 971.214 kb on - strand, within Dsui_0942 at 971.284 kb on + strand, within Dsui_0942 at 971.635 kb on - strand at 972.132 kb on + strand, within Dsui_0943 at 972.137 kb on + strand, within Dsui_0943 at 972.235 kb on + strand, within Dsui_0943 at 972.239 kb on + strand, within Dsui_0943 at 972.317 kb on - strand, within Dsui_0943
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 969,978 - +0.2 969,983 - -1.9 969,998 + +0.3 970,121 - +0.1 970,337 + -0.9 970,414 + Dsui_0941 0.46 +0.1 970,434 - +2.7 970,469 + Dsui_0941 0.59 -0.4 970,581 - Dsui_0941 0.85 -0.3 970,853 - +0.0 970,954 + Dsui_0942 0.28 -0.6 970,962 - Dsui_0942 0.29 +0.7 970,977 + Dsui_0942 0.32 -1.1 971,009 + Dsui_0942 0.37 -0.7 971,038 + +0.7 971,104 - Dsui_0942 0.54 +0.0 971,214 - Dsui_0942 0.73 +0.3 971,284 + Dsui_0942 0.85 -1.1 971,635 - +0.2 972,132 + Dsui_0943 0.28 -0.6 972,137 + Dsui_0943 0.29 +0.2 972,235 + Dsui_0943 0.35 +0.2 972,239 + Dsui_0943 0.35 -0.2 972,317 - Dsui_0943 0.40 +0.1
Or see this region's nucleotide sequence