Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0935 and Dsui_0936 are separated by 129 nucleotides Dsui_0936 and Dsui_0937 are separated by 99 nucleotides Dsui_0937 and Dsui_0938 are separated by 156 nucleotides Dsui_0938 and Dsui_0939 are separated by 97 nucleotides
Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413
_0935
Dsui_0936: Dsui_0936 - tRNA-Arg, at 964,543 to 964,619
_0936
Dsui_0937: Dsui_0937 - hypothetical protein, at 964,719 to 965,039
_0937
Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275
_0938
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Position (kb) 965
966
967 Strain fitness (log2 ratio) -1
0
1
2 at 964.316 kb on + strand at 964.404 kb on + strand at 964.415 kb on - strand at 964.437 kb on + strand at 964.449 kb on - strand at 964.638 kb on + strand at 964.646 kb on - strand at 964.647 kb on - strand at 964.668 kb on + strand at 964.768 kb on + strand, within Dsui_0937 at 964.779 kb on + strand, within Dsui_0937 at 964.788 kb on - strand, within Dsui_0937 at 964.838 kb on + strand at 964.908 kb on + strand, within Dsui_0937 at 964.983 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 965.026 kb on - strand at 965.049 kb on - strand at 965.056 kb on + strand at 965.074 kb on - strand at 965.147 kb on + strand at 965.155 kb on - strand at 965.178 kb on + strand at 965.187 kb on - strand at 965.194 kb on + strand at 965.320 kb on - strand at 965.400 kb on - strand, within Dsui_0938 at 965.404 kb on + strand, within Dsui_0938 at 965.459 kb on + strand, within Dsui_0938 at 965.482 kb on - strand, within Dsui_0938 at 965.486 kb on - strand, within Dsui_0938 at 965.682 kb on + strand, within Dsui_0938 at 965.957 kb on + strand, within Dsui_0938 at 966.020 kb on - strand, within Dsui_0938 at 966.066 kb on - strand, within Dsui_0938 at 966.294 kb on - strand at 966.294 kb on - strand at 966.336 kb on - strand at 966.354 kb on + strand at 966.403 kb on - strand at 966.419 kb on + strand at 966.487 kb on - strand at 966.552 kb on - strand at 966.581 kb on + strand, within Dsui_0939 at 966.711 kb on + strand, within Dsui_0939 at 966.719 kb on - strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.868 kb on - strand at 966.931 kb on - strand at 966.999 kb on - strand at 967.237 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand at 967.250 kb on + strand at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.251 kb on - strand at 967.251 kb on - strand, within Dsui_0939
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 964,316 + +1.0 964,404 + +0.7 964,415 - +0.2 964,437 + -0.9 964,449 - +0.1 964,638 + +1.3 964,646 - -0.8 964,647 - +0.7 964,668 + +0.6 964,768 + Dsui_0937 0.15 -0.5 964,779 + Dsui_0937 0.19 +0.7 964,788 - Dsui_0937 0.21 +0.7 964,838 + +1.4 964,908 + Dsui_0937 0.59 +0.1 964,983 - Dsui_0937 0.82 -1.6 964,994 - Dsui_0937 0.86 +1.5 964,994 - Dsui_0937 0.86 -0.6 965,026 - -0.3 965,049 - +0.2 965,056 + +0.6 965,074 - -0.3 965,147 + +1.2 965,155 - +0.5 965,178 + -0.1 965,187 - +1.4 965,194 + -0.6 965,320 - +1.1 965,400 - Dsui_0938 0.19 +0.9 965,404 + Dsui_0938 0.19 -0.6 965,459 + Dsui_0938 0.24 +1.4 965,482 - Dsui_0938 0.26 +0.9 965,486 - Dsui_0938 0.27 +0.4 965,682 + Dsui_0938 0.45 +0.0 965,957 + Dsui_0938 0.70 +0.1 966,020 - Dsui_0938 0.76 +0.5 966,066 - Dsui_0938 0.81 +0.5 966,294 - -0.1 966,294 - +0.4 966,336 - +0.5 966,354 + -0.6 966,403 - +1.5 966,419 + +0.7 966,487 - -0.1 966,552 - +0.1 966,581 + Dsui_0939 0.11 +0.0 966,711 + Dsui_0939 0.18 +0.1 966,719 - Dsui_0939 0.19 -0.1 966,855 + Dsui_0939 0.26 -0.0 966,855 + Dsui_0939 0.26 -0.2 966,868 - +0.7 966,931 - +1.7 966,999 - +2.7 967,237 + Dsui_0939 0.46 +1.0 967,242 + Dsui_0939 0.47 +0.1 967,242 + Dsui_0939 0.47 +0.3 967,242 + Dsui_0939 0.47 -0.0 967,242 + +1.1 967,250 + +1.1 967,250 - Dsui_0939 0.47 -0.1 967,250 - Dsui_0939 0.47 +0.4 967,250 - Dsui_0939 0.47 +0.4 967,250 - Dsui_0939 0.47 -0.8 967,251 - +0.9 967,251 - Dsui_0939 0.47 +0.9
Or see this region's nucleotide sequence