Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0924 and Dsui_0925 are separated by 2 nucleotides Dsui_0925 and Dsui_0926 are separated by 66 nucleotides Dsui_0926 and Dsui_0927 are separated by 3 nucleotides Dsui_0927 and Dsui_0928 are separated by 181 nucleotides
Dsui_0924: Dsui_0924 - putative permease, at 952,283 to 953,743
_0924
Dsui_0925: Dsui_0925 - small redox-active disulfide protein 2, at 953,746 to 953,988
_0925
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836
_0927
Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433
_0928
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.258 kb on - strand, within Dsui_0924 at 953.258 kb on - strand, within Dsui_0924 at 953.343 kb on - strand at 953.378 kb on + strand, within Dsui_0924 at 953.422 kb on + strand, within Dsui_0924 at 953.430 kb on + strand, within Dsui_0924 at 953.432 kb on - strand at 953.448 kb on + strand, within Dsui_0924 at 953.489 kb on + strand, within Dsui_0924 at 953.500 kb on + strand, within Dsui_0924 at 953.512 kb on - strand at 953.578 kb on - strand, within Dsui_0924 at 953.580 kb on + strand, within Dsui_0924 at 953.620 kb on + strand at 953.753 kb on + strand at 953.753 kb on + strand at 953.761 kb on - strand at 953.761 kb on - strand at 953.862 kb on - strand, within Dsui_0925 at 953.970 kb on + strand at 954.080 kb on + strand at 954.137 kb on + strand at 954.139 kb on + strand at 954.145 kb on - strand at 954.288 kb on + strand, within Dsui_0926 at 954.392 kb on + strand, within Dsui_0926 at 954.412 kb on + strand, within Dsui_0926 at 954.448 kb on - strand, within Dsui_0926 at 954.659 kb on - strand at 954.814 kb on + strand, within Dsui_0926 at 954.834 kb on + strand, within Dsui_0926 at 954.992 kb on - strand, within Dsui_0926 at 955.015 kb on - strand, within Dsui_0926 at 955.028 kb on + strand, within Dsui_0926 at 955.045 kb on + strand, within Dsui_0926 at 955.053 kb on - strand, within Dsui_0926 at 955.211 kb on + strand, within Dsui_0926 at 955.216 kb on - strand, within Dsui_0926 at 955.275 kb on + strand, within Dsui_0926 at 955.323 kb on + strand at 955.385 kb on - strand at 955.410 kb on + strand at 955.416 kb on + strand at 955.418 kb on - strand at 955.575 kb on - strand, within Dsui_0927 at 955.576 kb on - strand, within Dsui_0927 at 955.677 kb on + strand, within Dsui_0927 at 955.685 kb on - strand, within Dsui_0927 at 955.799 kb on + strand at 955.812 kb on - strand at 955.822 kb on - strand at 955.921 kb on + strand at 955.975 kb on + strand at 955.988 kb on - strand at 956.006 kb on + strand at 956.006 kb on + strand at 956.014 kb on + strand at 956.105 kb on + strand at 956.202 kb on - strand, within Dsui_0928 at 956.217 kb on + strand, within Dsui_0928 at 956.274 kb on - strand, within Dsui_0928 at 956.295 kb on - strand, within Dsui_0928 at 956.301 kb on + strand, within Dsui_0928 at 956.346 kb on + strand, within Dsui_0928 at 956.376 kb on + strand, within Dsui_0928 at 956.388 kb on - strand, within Dsui_0928 at 956.403 kb on - strand, within Dsui_0928
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 953,258 - Dsui_0924 0.67 -0.1 953,258 - Dsui_0924 0.67 +1.0 953,343 - +1.9 953,378 + Dsui_0924 0.75 +0.0 953,422 + Dsui_0924 0.78 +0.3 953,430 + Dsui_0924 0.79 -0.0 953,432 - -0.3 953,448 + Dsui_0924 0.80 +0.3 953,489 + Dsui_0924 0.83 +1.2 953,500 + Dsui_0924 0.83 -0.1 953,512 - -0.7 953,578 - Dsui_0924 0.89 -0.7 953,580 + Dsui_0924 0.89 +1.0 953,620 + +0.2 953,753 + +0.2 953,753 + +0.1 953,761 - -0.1 953,761 - -2.1 953,862 - Dsui_0925 0.48 +0.9 953,970 + -0.1 954,080 + +0.6 954,137 + +1.4 954,139 + +0.0 954,145 - +0.2 954,288 + Dsui_0926 0.17 +0.7 954,392 + Dsui_0926 0.24 +0.5 954,412 + Dsui_0926 0.26 +0.3 954,448 - Dsui_0926 0.28 +0.2 954,659 - +0.9 954,814 + Dsui_0926 0.55 +0.7 954,834 + Dsui_0926 0.56 +0.5 954,992 - Dsui_0926 0.67 -0.0 955,015 - Dsui_0926 0.69 +0.5 955,028 + Dsui_0926 0.70 +0.5 955,045 + Dsui_0926 0.71 -0.1 955,053 - Dsui_0926 0.72 +0.2 955,211 + Dsui_0926 0.83 +0.6 955,216 - Dsui_0926 0.83 +1.0 955,275 + Dsui_0926 0.88 +1.2 955,323 + +0.3 955,385 - +0.6 955,410 + -0.5 955,416 + +0.8 955,418 - +0.7 955,575 - Dsui_0927 0.32 -0.7 955,576 - Dsui_0927 0.33 +0.1 955,677 + Dsui_0927 0.59 +0.3 955,685 - Dsui_0927 0.61 -0.7 955,799 + -0.4 955,812 - +0.2 955,822 - -0.3 955,921 + -0.3 955,975 + -0.1 955,988 - -0.7 956,006 + -1.0 956,006 + -0.8 956,014 + -0.1 956,105 + +0.6 956,202 - Dsui_0928 0.13 -0.1 956,217 + Dsui_0928 0.14 +0.7 956,274 - Dsui_0928 0.18 +0.4 956,295 - Dsui_0928 0.20 +0.1 956,301 + Dsui_0928 0.20 +0.1 956,346 + Dsui_0928 0.23 +0.2 956,376 + Dsui_0928 0.25 -0.5 956,388 - Dsui_0928 0.26 -0.4 956,403 - Dsui_0928 0.27 +1.1
Or see this region's nucleotide sequence