Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0899 and Dsui_0900 are separated by 27 nucleotides Dsui_0900 and Dsui_0901 are separated by 23 nucleotides Dsui_0901 and Dsui_0902 are separated by 20 nucleotides Dsui_0902 and Dsui_0903 overlap by 4 nucleotides
Dsui_0899: Dsui_0899 - D-alanyl-D-alanine carboxypeptidase, at 917,330 to 918,499
_0899
Dsui_0900: Dsui_0900 - branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase, at 918,527 to 919,390
_0900
Dsui_0901: Dsui_0901 - hypothetical protein, at 919,414 to 919,713
_0901
Dsui_0902: Dsui_0902 - lipoate-protein ligase B, at 919,734 to 920,354
_0902
Dsui_0903: Dsui_0903 - lipoate synthase, at 920,351 to 921,298
_0903
Position (kb) 919
920 Strain fitness (log2 ratio) -1
0
1 at 918.463 kb on - strand at 918.477 kb on + strand at 918.477 kb on + strand at 918.485 kb on - strand at 918.514 kb on - strand at 918.550 kb on + strand at 918.696 kb on + strand, within Dsui_0900 at 918.696 kb on + strand, within Dsui_0900 at 918.714 kb on - strand, within Dsui_0900 at 918.782 kb on + strand, within Dsui_0900 at 918.870 kb on + strand, within Dsui_0900 at 918.977 kb on - strand, within Dsui_0900 at 919.020 kb on + strand, within Dsui_0900 at 919.101 kb on - strand, within Dsui_0900 at 919.119 kb on + strand, within Dsui_0900 at 919.214 kb on + strand, within Dsui_0900 at 919.225 kb on - strand, within Dsui_0900 at 919.320 kb on + strand at 919.384 kb on + strand at 919.476 kb on + strand, within Dsui_0901 at 919.618 kb on + strand, within Dsui_0901
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 918,463 - +0.4 918,477 + +0.1 918,477 + +0.1 918,485 - -0.0 918,514 - +0.3 918,550 + +0.0 918,696 + Dsui_0900 0.20 +0.0 918,696 + Dsui_0900 0.20 +0.1 918,714 - Dsui_0900 0.22 -0.5 918,782 + Dsui_0900 0.30 -0.4 918,870 + Dsui_0900 0.40 -0.2 918,977 - Dsui_0900 0.52 -0.4 919,020 + Dsui_0900 0.57 -0.3 919,101 - Dsui_0900 0.66 -0.0 919,119 + Dsui_0900 0.69 +0.2 919,214 + Dsui_0900 0.80 -0.4 919,225 - Dsui_0900 0.81 +0.1 919,320 + +0.1 919,384 + +0.2 919,476 + Dsui_0901 0.21 -0.7 919,618 + Dsui_0901 0.68 -1.3
Or see this region's nucleotide sequence