Strain Fitness in Dechlorosoma suillum PS around Dsui_0811

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0810 and Dsui_0811 overlap by 4 nucleotidesDsui_0811 and Dsui_0812 overlap by 41 nucleotides Dsui_0810: Dsui_0810 - signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 820,666 to 822,786 _0810 Dsui_0811: Dsui_0811 - hypothetical protein, at 822,783 to 823,391 _0811 Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688 _0812 Position (kb) 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2at 821.806 kb on + strand, within Dsui_0810at 821.847 kb on + strand, within Dsui_0810at 821.963 kb on + strand, within Dsui_0810at 822.000 kb on + strand, within Dsui_0810at 822.137 kb on - strand, within Dsui_0810at 822.159 kb on + strand, within Dsui_0810at 822.167 kb on - strand, within Dsui_0810at 822.182 kb on + strand, within Dsui_0810at 822.260 kb on + strand, within Dsui_0810at 822.368 kb on - strand, within Dsui_0810at 822.408 kb on + strand, within Dsui_0810at 822.686 kb on + strandat 822.686 kb on + strandat 822.694 kb on - strandat 822.759 kb on - strandat 822.795 kb on + strandat 822.806 kb on + strandat 822.870 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.902 kb on + strand, within Dsui_0811at 822.911 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.970 kb on - strand, within Dsui_0811at 822.980 kb on - strand, within Dsui_0811at 823.027 kb on - strand, within Dsui_0811at 823.054 kb on + strand, within Dsui_0811at 823.065 kb on + strand, within Dsui_0811at 823.189 kb on + strand, within Dsui_0811at 823.255 kb on - strand, within Dsui_0811at 823.256 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.297 kb on - strand, within Dsui_0811at 823.356 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.392 kb on - strandat 823.400 kb on - strandat 823.403 kb on + strandat 823.467 kb on + strandat 823.479 kb on + strandat 823.479 kb on + strandat 823.487 kb on - strand, within Dsui_0812at 823.522 kb on + strand, within Dsui_0812at 823.525 kb on - strand, within Dsui_0812at 823.539 kb on + strand, within Dsui_0812at 823.578 kb on - strand, within Dsui_0812at 823.685 kb on - strand, within Dsui_0812at 823.706 kb on - strand, within Dsui_0812at 823.708 kb on - strand, within Dsui_0812at 823.723 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812at 823.818 kb on + strand, within Dsui_0812at 823.826 kb on - strand, within Dsui_0812at 823.827 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.831 kb on - strand, within Dsui_0812at 823.841 kb on - strand, within Dsui_0812at 823.926 kb on + strand, within Dsui_0812at 823.931 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 823.936 kb on + strand, within Dsui_0812at 824.009 kb on - strand, within Dsui_0812at 824.017 kb on + strand, within Dsui_0812at 824.023 kb on + strand, within Dsui_0812at 824.025 kb on - strand, within Dsui_0812at 824.067 kb on + strand, within Dsui_0812at 824.095 kb on - strand, within Dsui_0812at 824.185 kb on + strand, within Dsui_0812at 824.222 kb on + strand, within Dsui_0812at 824.230 kb on - strand, within Dsui_0812at 824.270 kb on + strand, within Dsui_0812at 824.273 kb on - strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.329 kb on + strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.337 kb on - strand, within Dsui_0812at 824.342 kb on - strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.344 kb on + strand, within Dsui_0812at 824.352 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.357 kb on - strand, within Dsui_0812at 824.376 kb on - strand, within Dsui_0812at 824.386 kb on - strand, within Dsui_0812

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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821,806 + Dsui_0810 0.54 -0.8
821,847 + Dsui_0810 0.56 -0.3
821,963 + Dsui_0810 0.61 -0.7
822,000 + Dsui_0810 0.63 -0.6
822,137 - Dsui_0810 0.69 -1.1
822,159 + Dsui_0810 0.70 +0.1
822,167 - Dsui_0810 0.71 -0.9
822,182 + Dsui_0810 0.71 -0.7
822,260 + Dsui_0810 0.75 -0.4
822,368 - Dsui_0810 0.80 -0.8
822,408 + Dsui_0810 0.82 -1.8
822,686 + -0.6
822,686 + +0.9
822,694 - -0.2
822,759 - -1.5
822,795 + -0.2
822,806 + -0.3
822,870 + Dsui_0811 0.14 -1.3
822,892 + Dsui_0811 0.18 -0.1
822,892 + Dsui_0811 0.18 -0.0
822,902 + Dsui_0811 0.20 -0.6
822,911 + Dsui_0811 0.21 +1.7
822,952 + Dsui_0811 0.28 -0.1
822,952 + Dsui_0811 0.28 -0.1
822,970 - Dsui_0811 0.31 -1.2
822,980 - Dsui_0811 0.32 -0.4
823,027 - Dsui_0811 0.40 -2.4
823,054 + Dsui_0811 0.44 -1.2
823,065 + Dsui_0811 0.46 -2.3
823,189 + Dsui_0811 0.67 +0.5
823,255 - Dsui_0811 0.78 -0.6
823,256 - Dsui_0811 0.78 -0.7
823,282 - Dsui_0811 0.82 -0.7
823,282 - Dsui_0811 0.82 -0.3
823,297 - Dsui_0811 0.84 +0.3
823,356 - +0.2
823,379 - +0.3
823,379 - -0.6
823,379 - -0.3
823,392 - -0.4
823,400 - -0.0
823,403 + +2.0
823,467 + -0.2
823,479 + +0.1
823,479 + +0.4
823,487 - Dsui_0812 0.10 -0.2
823,522 + Dsui_0812 0.13 +0.4
823,525 - Dsui_0812 0.13 -0.5
823,539 + Dsui_0812 0.14 -0.1
823,578 - Dsui_0812 0.17 -0.0
823,685 - Dsui_0812 0.25 -0.0
823,706 - Dsui_0812 0.27 +0.1
823,708 - Dsui_0812 0.27 +0.5
823,723 + Dsui_0812 0.28 -0.8
823,752 + Dsui_0812 0.30 -0.6
823,752 + Dsui_0812 0.30 -0.3
823,818 + Dsui_0812 0.35 +0.7
823,826 - Dsui_0812 0.36 +0.4
823,827 - Dsui_0812 0.36 +0.1
823,831 - Dsui_0812 0.36 +0.3
823,831 - Dsui_0812 0.36 -0.5
823,831 - Dsui_0812 0.36 -0.6
823,831 - Dsui_0812 0.36 +0.1
823,841 - Dsui_0812 0.37 -0.2
823,926 + Dsui_0812 0.43 -1.5
823,931 + Dsui_0812 0.43 -0.8
823,936 + Dsui_0812 0.44 +1.0
823,936 + Dsui_0812 0.44 +0.9
823,936 + Dsui_0812 0.44 -0.1
824,009 - Dsui_0812 0.49 -0.0
824,017 + Dsui_0812 0.50 +0.4
824,023 + Dsui_0812 0.50 -0.1
824,025 - Dsui_0812 0.50 +0.4
824,067 + Dsui_0812 0.54 +0.4
824,095 - Dsui_0812 0.56 +0.6
824,185 + Dsui_0812 0.62 -1.8
824,222 + Dsui_0812 0.65 +1.8
824,230 - Dsui_0812 0.66 -0.7
824,270 + Dsui_0812 0.69 +0.7
824,273 - Dsui_0812 0.69 +0.2
824,329 + Dsui_0812 0.73 +0.8
824,329 + Dsui_0812 0.73 -0.5
824,329 + Dsui_0812 0.73 +0.2
824,329 + Dsui_0812 0.73 -0.2
824,337 - Dsui_0812 0.74 -0.3
824,337 - Dsui_0812 0.74 +1.7
824,337 - Dsui_0812 0.74 -0.1
824,337 - Dsui_0812 0.74 -0.1
824,342 - Dsui_0812 0.74 +0.7
824,344 + Dsui_0812 0.74 -1.1
824,344 + Dsui_0812 0.74 -0.1
824,352 - Dsui_0812 0.75 +0.2
824,357 - Dsui_0812 0.75 -1.1
824,357 - Dsui_0812 0.75 +1.7
824,376 - Dsui_0812 0.77 +0.3
824,386 - Dsui_0812 0.77 -0.1

Or see this region's nucleotide sequence