Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0724 and Dsui_0725 are separated by 99 nucleotides Dsui_0725 and Dsui_0726 are separated by 2 nucleotides Dsui_0726 and Dsui_0727 are separated by 35 nucleotides
Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001
_0724
Dsui_0725: Dsui_0725 - putative hydrolase of the alpha/beta superfamily, at 720,101 to 720,739
_0725
Dsui_0726: Dsui_0726 - ferredoxin, at 720,742 to 721,050
_0726
Dsui_0727: Dsui_0727 - putative integral membrane protein, at 721,086 to 722,141
_0727
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1 at 719.166 kb on - strand at 719.326 kb on + strand, within Dsui_0724 at 719.422 kb on + strand at 719.430 kb on + strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.596 kb on - strand, within Dsui_0724 at 719.692 kb on - strand, within Dsui_0724 at 719.851 kb on + strand at 719.980 kb on - strand at 719.999 kb on - strand at 720.138 kb on - strand at 720.207 kb on + strand, within Dsui_0725 at 720.210 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.277 kb on - strand, within Dsui_0725 at 720.384 kb on + strand, within Dsui_0725 at 720.461 kb on + strand, within Dsui_0725 at 720.531 kb on - strand, within Dsui_0725 at 720.589 kb on - strand, within Dsui_0725 at 720.664 kb on + strand, within Dsui_0725 at 720.729 kb on - strand at 720.804 kb on + strand at 720.830 kb on - strand, within Dsui_0726 at 720.832 kb on + strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.911 kb on - strand, within Dsui_0726 at 720.958 kb on - strand, within Dsui_0726 at 721.033 kb on + strand at 721.106 kb on + strand at 721.141 kb on - strand at 721.154 kb on + strand at 721.244 kb on + strand, within Dsui_0727 at 721.330 kb on + strand, within Dsui_0727 at 721.358 kb on + strand at 721.397 kb on - strand, within Dsui_0727 at 721.541 kb on + strand, within Dsui_0727
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 719,166 - +0.4 719,326 + Dsui_0724 0.27 +0.4 719,422 + +1.7 719,430 + Dsui_0724 0.38 -0.5 719,430 - Dsui_0724 0.38 +0.1 719,430 - Dsui_0724 0.38 -1.5 719,499 + Dsui_0724 0.46 -0.0 719,499 + Dsui_0724 0.46 +0.2 719,596 - Dsui_0724 0.56 +0.4 719,692 - Dsui_0724 0.66 +0.3 719,851 + +0.3 719,980 - +1.0 719,999 - -1.3 720,138 - -0.7 720,207 + Dsui_0725 0.17 -1.0 720,210 - Dsui_0725 0.17 +0.3 720,215 - Dsui_0725 0.18 +0.7 720,215 - Dsui_0725 0.18 -1.5 720,277 - Dsui_0725 0.28 -0.5 720,384 + Dsui_0725 0.44 -0.3 720,461 + Dsui_0725 0.56 -0.0 720,531 - Dsui_0725 0.67 -1.8 720,589 - Dsui_0725 0.76 -1.4 720,664 + Dsui_0725 0.88 +0.2 720,729 - -0.2 720,804 + +0.3 720,830 - Dsui_0726 0.28 +0.6 720,832 + Dsui_0726 0.29 -0.4 720,845 - Dsui_0726 0.33 +0.8 720,845 - Dsui_0726 0.33 +0.6 720,911 - Dsui_0726 0.55 -0.1 720,958 - Dsui_0726 0.70 +0.9 721,033 + +0.1 721,106 + -0.2 721,141 - +0.7 721,154 + -0.0 721,244 + Dsui_0727 0.15 +0.5 721,330 + Dsui_0727 0.23 -0.3 721,358 + +0.3 721,397 - Dsui_0727 0.29 +0.1 721,541 + Dsui_0727 0.43 -0.5
Or see this region's nucleotide sequence