Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0648 and Dsui_0649 are separated by 19 nucleotides Dsui_0649 and Dsui_0650 overlap by 4 nucleotides Dsui_0650 and Dsui_0651 are separated by 14 nucleotides Dsui_0651 and Dsui_0652 are separated by 4 nucleotides
Dsui_0648: Dsui_0648 - acetyltransferase, at 642,232 to 642,753
_0648
Dsui_0649: Dsui_0649 - diaminopimelate epimerase, at 642,773 to 643,603
_0649
Dsui_0650: Dsui_0650 - hypothetical protein, at 643,600 to 644,280
_0650
Dsui_0651: Dsui_0651 - tyrosine recombinase XerC, at 644,295 to 645,200
_0651
Dsui_0652: Dsui_0652 - putative membrane protein, at 645,205 to 646,335
_0652
Position (kb) 643
644
645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 642.642 kb on + strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.668 kb on + strand, within Dsui_0648 at 642.684 kb on - strand, within Dsui_0648 at 642.734 kb on - strand at 642.763 kb on + strand at 643.608 kb on + strand at 643.616 kb on - strand at 643.650 kb on - strand at 643.676 kb on - strand, within Dsui_0650 at 643.725 kb on + strand, within Dsui_0650 at 643.757 kb on + strand, within Dsui_0650 at 643.776 kb on + strand, within Dsui_0650 at 643.784 kb on - strand at 643.784 kb on - strand, within Dsui_0650 at 643.864 kb on - strand, within Dsui_0650 at 644.038 kb on + strand, within Dsui_0650 at 644.041 kb on - strand, within Dsui_0650 at 644.047 kb on - strand, within Dsui_0650 at 644.136 kb on - strand at 644.282 kb on - strand at 644.428 kb on + strand, within Dsui_0651 at 644.436 kb on - strand, within Dsui_0651 at 644.436 kb on - strand, within Dsui_0651 at 644.632 kb on - strand at 644.731 kb on - strand at 644.739 kb on - strand, within Dsui_0651 at 644.890 kb on + strand, within Dsui_0651 at 644.999 kb on - strand, within Dsui_0651 at 645.057 kb on + strand, within Dsui_0651 at 645.133 kb on - strand at 645.133 kb on - strand at 645.133 kb on - strand at 645.162 kb on + strand at 645.170 kb on - strand at 645.196 kb on + strand at 645.215 kb on - strand at 645.229 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 642,642 + Dsui_0648 0.79 +0.7 642,650 - Dsui_0648 0.80 -0.0 642,650 - Dsui_0648 0.80 -1.3 642,668 + Dsui_0648 0.84 -0.7 642,684 - Dsui_0648 0.87 +0.6 642,734 - -0.4 642,763 + -0.2 643,608 + -0.5 643,616 - +0.8 643,650 - +1.7 643,676 - Dsui_0650 0.11 +0.2 643,725 + Dsui_0650 0.18 +0.8 643,757 + Dsui_0650 0.23 +0.0 643,776 + Dsui_0650 0.26 +0.1 643,784 - -0.3 643,784 - Dsui_0650 0.27 -0.9 643,864 - Dsui_0650 0.39 +0.1 644,038 + Dsui_0650 0.64 -1.8 644,041 - Dsui_0650 0.65 -1.2 644,047 - Dsui_0650 0.66 +0.7 644,136 - +2.4 644,282 - +0.1 644,428 + Dsui_0651 0.15 -0.3 644,436 - Dsui_0651 0.16 -0.3 644,436 - Dsui_0651 0.16 -0.9 644,632 - +1.1 644,731 - +0.7 644,739 - Dsui_0651 0.49 -0.6 644,890 + Dsui_0651 0.66 +0.5 644,999 - Dsui_0651 0.78 -1.2 645,057 + Dsui_0651 0.84 -0.1 645,133 - +0.7 645,133 - +0.7 645,133 - -0.9 645,162 + -0.2 645,170 - -0.5 645,196 + -0.0 645,215 - -1.0 645,229 + +0.1
Or see this region's nucleotide sequence