Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0551 and Dsui_0552 are separated by 22 nucleotides Dsui_0552 and Dsui_0553 overlap by 8 nucleotides Dsui_0553 and Dsui_0554 are separated by 153 nucleotides Dsui_0554 and Dsui_0555 are separated by 8 nucleotides
Dsui_0551: Dsui_0551 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifN, at 554,745 to 556,130
_0551
Dsui_0552: Dsui_0552 - nitrogen fixation protein NifX, at 556,153 to 556,581
_0552
Dsui_0553: Dsui_0553 - putative nitrogen fixation protein, at 556,574 to 557,044
_0553
Dsui_0554: Dsui_0554 - uncharacterized conserved small protein containing a coiled-coil domain, at 557,198 to 557,395
_0554
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Position (kb)
556
557 Strain fitness (log2 ratio)
-1
0
1
2 at 555.155 kb on - strand, within Dsui_0551 at 555.176 kb on - strand, within Dsui_0551 at 555.185 kb on - strand at 555.248 kb on + strand, within Dsui_0551 at 555.358 kb on - strand, within Dsui_0551 at 555.484 kb on + strand at 555.507 kb on + strand at 555.533 kb on + strand, within Dsui_0551 at 555.578 kb on - strand, within Dsui_0551 at 555.640 kb on - strand, within Dsui_0551 at 555.769 kb on - strand at 555.790 kb on - strand, within Dsui_0551 at 555.974 kb on + strand at 556.039 kb on - strand at 556.152 kb on - strand at 556.193 kb on + strand at 556.209 kb on - strand, within Dsui_0552 at 556.259 kb on + strand, within Dsui_0552 at 556.272 kb on - strand, within Dsui_0552 at 556.351 kb on - strand, within Dsui_0552 at 556.355 kb on + strand, within Dsui_0552 at 556.478 kb on - strand at 556.485 kb on - strand at 556.534 kb on - strand, within Dsui_0552 at 556.597 kb on - strand at 556.717 kb on + strand, within Dsui_0553 at 556.784 kb on + strand, within Dsui_0553 at 556.839 kb on - strand, within Dsui_0553 at 556.876 kb on - strand, within Dsui_0553 at 556.931 kb on + strand at 557.008 kb on - strand at 557.055 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.073 kb on + strand at 557.168 kb on - strand at 557.254 kb on - strand, within Dsui_0554 at 557.259 kb on - strand, within Dsui_0554 at 557.266 kb on - strand, within Dsui_0554 at 557.335 kb on - strand, within Dsui_0554 at 557.534 kb on - strand, within Dsui_0555
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 555,155 - Dsui_0551 0.30 -0.1 555,176 - Dsui_0551 0.31 +0.6 555,185 - +0.3 555,248 + Dsui_0551 0.36 +0.2 555,358 - Dsui_0551 0.44 +0.1 555,484 + -0.4 555,507 + +2.0 555,533 + Dsui_0551 0.57 +0.6 555,578 - Dsui_0551 0.60 +0.9 555,640 - Dsui_0551 0.65 +0.3 555,769 - +1.2 555,790 - Dsui_0551 0.75 +0.4 555,974 + +0.1 556,039 - +0.3 556,152 - -0.4 556,193 + +1.2 556,209 - Dsui_0552 0.13 -1.4 556,259 + Dsui_0552 0.25 -1.3 556,272 - Dsui_0552 0.28 -1.4 556,351 - Dsui_0552 0.46 +0.8 556,355 + Dsui_0552 0.47 +0.6 556,478 - +1.6 556,485 - +0.4 556,534 - Dsui_0552 0.89 -1.1 556,597 - -0.5 556,717 + Dsui_0553 0.30 +0.5 556,784 + Dsui_0553 0.45 -0.0 556,839 - Dsui_0553 0.56 +0.6 556,876 - Dsui_0553 0.64 -0.2 556,931 + +1.2 557,008 - +0.2 557,055 - +1.3 557,056 - +0.9 557,056 - +1.6 557,056 - +0.1 557,073 + -0.2 557,168 - -0.1 557,254 - Dsui_0554 0.28 -0.3 557,259 - Dsui_0554 0.31 -0.8 557,266 - Dsui_0554 0.34 +0.8 557,335 - Dsui_0554 0.69 -0.3 557,534 - Dsui_0555 0.34 -0.6
Or see this region's nucleotide sequence