Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0331 and Dsui_0332 are separated by 94 nucleotides Dsui_0332 and Dsui_0333 are separated by 28 nucleotides Dsui_0333 and Dsui_0334 are separated by 37 nucleotides Dsui_0334 and Dsui_0335 are separated by 10 nucleotides
Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588
_0331
Dsui_0332: Dsui_0332 - ribosomal protein L17, at 341,683 to 342,081
_0332
Dsui_0333: Dsui_0333 - DNA-directed RNA polymerase, alpha subunit, at 342,110 to 343,084
_0333
Dsui_0334: Dsui_0334 - ribosomal protein S4, bacterial/organelle type, at 343,122 to 343,751
_0334
Dsui_0335: Dsui_0335 - 30S ribosomal protein S11, at 343,762 to 344,151
_0335
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1 at 341.221 kb on - strand, within Dsui_0331 at 341.240 kb on + strand, within Dsui_0331 at 341.240 kb on + strand, within Dsui_0331 at 341.243 kb on - strand, within Dsui_0331 at 341.246 kb on + strand, within Dsui_0331 at 341.248 kb on - strand, within Dsui_0331 at 341.333 kb on + strand, within Dsui_0331 at 341.341 kb on - strand, within Dsui_0331 at 341.358 kb on + strand, within Dsui_0331 at 341.361 kb on + strand, within Dsui_0331 at 341.368 kb on - strand, within Dsui_0331 at 341.375 kb on + strand, within Dsui_0331 at 341.375 kb on + strand, within Dsui_0331 at 341.380 kb on + strand, within Dsui_0331 at 341.382 kb on + strand, within Dsui_0331 at 341.383 kb on - strand, within Dsui_0331 at 341.388 kb on - strand, within Dsui_0331 at 341.388 kb on - strand, within Dsui_0331 at 341.413 kb on + strand, within Dsui_0331 at 341.421 kb on - strand, within Dsui_0331 at 341.432 kb on + strand, within Dsui_0331 at 341.488 kb on + strand at 341.521 kb on - strand at 341.540 kb on - strand at 341.545 kb on + strand at 341.553 kb on - strand at 341.553 kb on - strand at 341.553 kb on - strand at 341.688 kb on - strand at 341.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 341,221 - Dsui_0331 0.76 -0.1 341,240 + Dsui_0331 0.77 -0.0 341,240 + Dsui_0331 0.77 +0.4 341,243 - Dsui_0331 0.78 -0.4 341,246 + Dsui_0331 0.78 -0.5 341,248 - Dsui_0331 0.78 -0.3 341,333 + Dsui_0331 0.83 -0.3 341,341 - Dsui_0331 0.84 +0.6 341,358 + Dsui_0331 0.85 -0.1 341,361 + Dsui_0331 0.85 -0.2 341,368 - Dsui_0331 0.86 +0.3 341,375 + Dsui_0331 0.86 -0.0 341,375 + Dsui_0331 0.86 +0.3 341,380 + Dsui_0331 0.86 -0.2 341,382 + Dsui_0331 0.87 -0.0 341,383 - Dsui_0331 0.87 -0.1 341,388 - Dsui_0331 0.87 +0.1 341,388 - Dsui_0331 0.87 -0.4 341,413 + Dsui_0331 0.89 -0.4 341,421 - Dsui_0331 0.89 -0.2 341,432 + Dsui_0331 0.90 -0.1 341,488 + -0.0 341,521 - -0.2 341,540 - -0.1 341,545 + -0.3 341,553 - -0.4 341,553 - -0.4 341,553 - +0.3 341,688 - -0.5 341,688 - -0.5
Or see this region's nucleotide sequence