Strain Fitness in Dechlorosoma suillum PS around Dsui_0331

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0329 and Dsui_0330 overlap by 4 nucleotidesDsui_0330 and Dsui_0331 overlap by 4 nucleotidesDsui_0331 and Dsui_0332 are separated by 94 nucleotidesDsui_0332 and Dsui_0333 are separated by 28 nucleotides Dsui_0329: Dsui_0329 - PAS domain S-box, at 336,455 to 339,163 _0329 Dsui_0330: Dsui_0330 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 339,160 to 340,053 _0330 Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588 _0331 Dsui_0332: Dsui_0332 - ribosomal protein L17, at 341,683 to 342,081 _0332 Dsui_0333: Dsui_0333 - DNA-directed RNA polymerase, alpha subunit, at 342,110 to 343,084 _0333 Position (kb) 340 341 342Strain fitness (log2 ratio) -1 0 1 2at 339.079 kb on - strandat 339.156 kb on + strandat 339.172 kb on - strandat 339.240 kb on + strandat 339.251 kb on - strand, within Dsui_0330at 339.259 kb on - strand, within Dsui_0330at 339.278 kb on - strand, within Dsui_0330at 339.354 kb on + strand, within Dsui_0330at 339.363 kb on + strand, within Dsui_0330at 339.427 kb on + strand, within Dsui_0330at 339.450 kb on + strand, within Dsui_0330at 339.470 kb on - strand, within Dsui_0330at 339.525 kb on - strand, within Dsui_0330at 339.528 kb on + strand, within Dsui_0330at 339.555 kb on - strand, within Dsui_0330at 339.572 kb on + strand, within Dsui_0330at 339.578 kb on - strand, within Dsui_0330at 339.652 kb on + strand, within Dsui_0330at 339.652 kb on + strand, within Dsui_0330at 339.657 kb on + strand, within Dsui_0330at 339.660 kb on - strand, within Dsui_0330at 339.665 kb on - strand, within Dsui_0330at 339.683 kb on + strand, within Dsui_0330at 339.886 kb on - strand, within Dsui_0330at 339.886 kb on - strand, within Dsui_0330at 339.888 kb on + strand, within Dsui_0330at 339.972 kb on - strandat 340.013 kb on - strandat 340.021 kb on + strandat 340.166 kb on - strandat 340.185 kb on - strandat 340.207 kb on + strand, within Dsui_0331at 340.234 kb on - strand, within Dsui_0331at 340.254 kb on - strandat 340.287 kb on - strand, within Dsui_0331at 340.314 kb on + strand, within Dsui_0331at 340.327 kb on - strand, within Dsui_0331at 340.395 kb on - strand, within Dsui_0331at 340.409 kb on + strand, within Dsui_0331at 340.436 kb on - strand, within Dsui_0331at 340.436 kb on - strand, within Dsui_0331at 340.533 kb on - strand, within Dsui_0331at 340.584 kb on - strand, within Dsui_0331at 340.605 kb on - strand, within Dsui_0331at 340.647 kb on + strand, within Dsui_0331at 340.718 kb on + strand, within Dsui_0331at 340.915 kb on + strand, within Dsui_0331at 340.923 kb on - strand, within Dsui_0331at 340.940 kb on + strand, within Dsui_0331at 340.958 kb on - strand, within Dsui_0331at 341.088 kb on + strand, within Dsui_0331at 341.099 kb on + strand, within Dsui_0331at 341.221 kb on - strand, within Dsui_0331at 341.240 kb on + strand, within Dsui_0331at 341.240 kb on + strand, within Dsui_0331at 341.243 kb on - strand, within Dsui_0331at 341.246 kb on + strand, within Dsui_0331at 341.248 kb on - strand, within Dsui_0331at 341.333 kb on + strand, within Dsui_0331at 341.341 kb on - strand, within Dsui_0331at 341.358 kb on + strand, within Dsui_0331at 341.361 kb on + strand, within Dsui_0331at 341.368 kb on - strand, within Dsui_0331at 341.375 kb on + strand, within Dsui_0331at 341.375 kb on + strand, within Dsui_0331at 341.380 kb on + strand, within Dsui_0331at 341.382 kb on + strand, within Dsui_0331at 341.383 kb on - strand, within Dsui_0331at 341.388 kb on - strand, within Dsui_0331at 341.388 kb on - strand, within Dsui_0331at 341.413 kb on + strand, within Dsui_0331at 341.421 kb on - strand, within Dsui_0331at 341.432 kb on + strand, within Dsui_0331at 341.488 kb on + strandat 341.521 kb on - strandat 341.540 kb on - strandat 341.545 kb on + strandat 341.553 kb on - strandat 341.553 kb on - strandat 341.553 kb on - strandat 341.688 kb on - strandat 341.688 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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339,079 - +0.2
339,156 + -0.2
339,172 - +0.0
339,240 + -0.1
339,251 - Dsui_0330 0.10 +0.1
339,259 - Dsui_0330 0.11 -0.7
339,278 - Dsui_0330 0.13 +0.0
339,354 + Dsui_0330 0.22 -0.5
339,363 + Dsui_0330 0.23 -0.2
339,427 + Dsui_0330 0.30 +0.1
339,450 + Dsui_0330 0.32 -0.1
339,470 - Dsui_0330 0.35 -1.3
339,525 - Dsui_0330 0.41 -1.2
339,528 + Dsui_0330 0.41 -0.2
339,555 - Dsui_0330 0.44 -0.5
339,572 + Dsui_0330 0.46 -0.3
339,578 - Dsui_0330 0.47 -0.1
339,652 + Dsui_0330 0.55 -0.2
339,652 + Dsui_0330 0.55 -0.2
339,657 + Dsui_0330 0.56 -0.4
339,660 - Dsui_0330 0.56 +1.0
339,665 - Dsui_0330 0.56 -0.0
339,683 + Dsui_0330 0.59 -0.6
339,886 - Dsui_0330 0.81 -0.1
339,886 - Dsui_0330 0.81 -0.6
339,888 + Dsui_0330 0.81 -0.4
339,972 - -0.3
340,013 - -0.9
340,021 + +0.0
340,166 - -0.0
340,185 - -0.7
340,207 + Dsui_0331 0.10 -0.5
340,234 - Dsui_0331 0.12 -0.7
340,254 - +1.9
340,287 - Dsui_0331 0.15 -0.4
340,314 + Dsui_0331 0.17 -0.3
340,327 - Dsui_0331 0.18 -0.7
340,395 - Dsui_0331 0.22 -0.9
340,409 + Dsui_0331 0.23 -0.8
340,436 - Dsui_0331 0.25 +0.1
340,436 - Dsui_0331 0.25 -0.4
340,533 - Dsui_0331 0.31 -0.1
340,584 - Dsui_0331 0.35 +0.2
340,605 - Dsui_0331 0.36 +0.7
340,647 + Dsui_0331 0.39 -0.3
340,718 + Dsui_0331 0.43 +0.2
340,915 + Dsui_0331 0.56 -0.2
340,923 - Dsui_0331 0.57 -0.1
340,940 + Dsui_0331 0.58 -0.1
340,958 - Dsui_0331 0.59 +0.0
341,088 + Dsui_0331 0.67 -0.1
341,099 + Dsui_0331 0.68 +0.2
341,221 - Dsui_0331 0.76 -0.1
341,240 + Dsui_0331 0.77 -0.0
341,240 + Dsui_0331 0.77 +0.4
341,243 - Dsui_0331 0.78 -0.4
341,246 + Dsui_0331 0.78 -0.5
341,248 - Dsui_0331 0.78 -0.3
341,333 + Dsui_0331 0.83 -0.3
341,341 - Dsui_0331 0.84 +0.6
341,358 + Dsui_0331 0.85 -0.1
341,361 + Dsui_0331 0.85 -0.2
341,368 - Dsui_0331 0.86 +0.3
341,375 + Dsui_0331 0.86 -0.0
341,375 + Dsui_0331 0.86 +0.3
341,380 + Dsui_0331 0.86 -0.2
341,382 + Dsui_0331 0.87 -0.0
341,383 - Dsui_0331 0.87 -0.1
341,388 - Dsui_0331 0.87 +0.1
341,388 - Dsui_0331 0.87 -0.4
341,413 + Dsui_0331 0.89 -0.4
341,421 - Dsui_0331 0.89 -0.2
341,432 + Dsui_0331 0.90 -0.1
341,488 + -0.0
341,521 - -0.2
341,540 - -0.1
341,545 + -0.3
341,553 - -0.4
341,553 - -0.4
341,553 - +0.3
341,688 - -0.5
341,688 - -0.5

Or see this region's nucleotide sequence