Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0329 and Dsui_0330 overlap by 4 nucleotides Dsui_0330 and Dsui_0331 overlap by 4 nucleotides
Dsui_0329: Dsui_0329 - PAS domain S-box, at 336,455 to 339,163
_0329
Dsui_0330: Dsui_0330 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 339,160 to 340,053
_0330
Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588
_0331
Position (kb) 339
340
341 Strain fitness (log2 ratio) -1
0
1
2 at 338.293 kb on - strand, within Dsui_0329 at 338.293 kb on - strand, within Dsui_0329 at 338.378 kb on - strand, within Dsui_0329 at 338.378 kb on - strand, within Dsui_0329 at 338.460 kb on - strand, within Dsui_0329 at 338.474 kb on + strand, within Dsui_0329 at 338.514 kb on - strand, within Dsui_0329 at 338.539 kb on + strand, within Dsui_0329 at 338.596 kb on - strand at 338.616 kb on - strand, within Dsui_0329 at 338.752 kb on + strand, within Dsui_0329 at 338.752 kb on + strand, within Dsui_0329 at 338.765 kb on + strand, within Dsui_0329 at 338.808 kb on - strand, within Dsui_0329 at 338.847 kb on + strand, within Dsui_0329 at 338.945 kb on + strand at 338.963 kb on - strand at 338.963 kb on - strand at 339.020 kb on + strand at 339.021 kb on + strand at 339.079 kb on - strand at 339.156 kb on + strand at 339.172 kb on - strand at 339.240 kb on + strand at 339.251 kb on - strand, within Dsui_0330 at 339.259 kb on - strand, within Dsui_0330 at 339.278 kb on - strand, within Dsui_0330 at 339.354 kb on + strand, within Dsui_0330 at 339.363 kb on + strand, within Dsui_0330 at 339.427 kb on + strand, within Dsui_0330 at 339.450 kb on + strand, within Dsui_0330 at 339.470 kb on - strand, within Dsui_0330 at 339.525 kb on - strand, within Dsui_0330 at 339.528 kb on + strand, within Dsui_0330 at 339.555 kb on - strand, within Dsui_0330 at 339.572 kb on + strand, within Dsui_0330 at 339.578 kb on - strand, within Dsui_0330 at 339.652 kb on + strand, within Dsui_0330 at 339.652 kb on + strand, within Dsui_0330 at 339.657 kb on + strand, within Dsui_0330 at 339.660 kb on - strand, within Dsui_0330 at 339.665 kb on - strand, within Dsui_0330 at 339.683 kb on + strand, within Dsui_0330 at 339.886 kb on - strand, within Dsui_0330 at 339.886 kb on - strand, within Dsui_0330 at 339.888 kb on + strand, within Dsui_0330 at 339.972 kb on - strand at 340.013 kb on - strand at 340.021 kb on + strand at 340.166 kb on - strand at 340.185 kb on - strand at 340.207 kb on + strand, within Dsui_0331 at 340.234 kb on - strand, within Dsui_0331 at 340.254 kb on - strand at 340.287 kb on - strand, within Dsui_0331 at 340.314 kb on + strand, within Dsui_0331 at 340.327 kb on - strand, within Dsui_0331 at 340.395 kb on - strand, within Dsui_0331 at 340.409 kb on + strand, within Dsui_0331 at 340.436 kb on - strand, within Dsui_0331 at 340.436 kb on - strand, within Dsui_0331 at 340.533 kb on - strand, within Dsui_0331 at 340.584 kb on - strand, within Dsui_0331 at 340.605 kb on - strand, within Dsui_0331 at 340.647 kb on + strand, within Dsui_0331 at 340.718 kb on + strand, within Dsui_0331 at 340.915 kb on + strand, within Dsui_0331 at 340.923 kb on - strand, within Dsui_0331 at 340.940 kb on + strand, within Dsui_0331 at 340.958 kb on - strand, within Dsui_0331
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 338,293 - Dsui_0329 0.68 -0.6 338,293 - Dsui_0329 0.68 -0.1 338,378 - Dsui_0329 0.71 +0.0 338,378 - Dsui_0329 0.71 +0.0 338,460 - Dsui_0329 0.74 +0.5 338,474 + Dsui_0329 0.75 +0.1 338,514 - Dsui_0329 0.76 -0.2 338,539 + Dsui_0329 0.77 +0.1 338,596 - +0.4 338,616 - Dsui_0329 0.80 -1.2 338,752 + Dsui_0329 0.85 -0.2 338,752 + Dsui_0329 0.85 +0.1 338,765 + Dsui_0329 0.85 -0.3 338,808 - Dsui_0329 0.87 +0.2 338,847 + Dsui_0329 0.88 +0.4 338,945 + -0.1 338,963 - -0.1 338,963 - -0.1 339,020 + -0.5 339,021 + -0.7 339,079 - +0.2 339,156 + -0.2 339,172 - +0.0 339,240 + -0.1 339,251 - Dsui_0330 0.10 +0.1 339,259 - Dsui_0330 0.11 -0.7 339,278 - Dsui_0330 0.13 +0.0 339,354 + Dsui_0330 0.22 -0.5 339,363 + Dsui_0330 0.23 -0.2 339,427 + Dsui_0330 0.30 +0.1 339,450 + Dsui_0330 0.32 -0.1 339,470 - Dsui_0330 0.35 -1.3 339,525 - Dsui_0330 0.41 -1.2 339,528 + Dsui_0330 0.41 -0.2 339,555 - Dsui_0330 0.44 -0.5 339,572 + Dsui_0330 0.46 -0.3 339,578 - Dsui_0330 0.47 -0.1 339,652 + Dsui_0330 0.55 -0.2 339,652 + Dsui_0330 0.55 -0.2 339,657 + Dsui_0330 0.56 -0.4 339,660 - Dsui_0330 0.56 +1.0 339,665 - Dsui_0330 0.56 -0.0 339,683 + Dsui_0330 0.59 -0.6 339,886 - Dsui_0330 0.81 -0.1 339,886 - Dsui_0330 0.81 -0.6 339,888 + Dsui_0330 0.81 -0.4 339,972 - -0.3 340,013 - -0.9 340,021 + +0.0 340,166 - -0.0 340,185 - -0.7 340,207 + Dsui_0331 0.10 -0.5 340,234 - Dsui_0331 0.12 -0.7 340,254 - +1.9 340,287 - Dsui_0331 0.15 -0.4 340,314 + Dsui_0331 0.17 -0.3 340,327 - Dsui_0331 0.18 -0.7 340,395 - Dsui_0331 0.22 -0.9 340,409 + Dsui_0331 0.23 -0.8 340,436 - Dsui_0331 0.25 +0.1 340,436 - Dsui_0331 0.25 -0.4 340,533 - Dsui_0331 0.31 -0.1 340,584 - Dsui_0331 0.35 +0.2 340,605 - Dsui_0331 0.36 +0.7 340,647 + Dsui_0331 0.39 -0.3 340,718 + Dsui_0331 0.43 +0.2 340,915 + Dsui_0331 0.56 -0.2 340,923 - Dsui_0331 0.57 -0.1 340,940 + Dsui_0331 0.58 -0.1 340,958 - Dsui_0331 0.59 +0.0
Or see this region's nucleotide sequence