Strain Fitness in Dechlorosoma suillum PS around Dsui_0327

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0326 and Dsui_0327 are separated by 86 nucleotidesDsui_0327 and Dsui_0328 are separated by 282 nucleotides Dsui_0326: Dsui_0326 - acyl-CoA dehydrogenase, at 331,172 to 333,508 _0326 Dsui_0327: Dsui_0327 - transcriptional regulator, at 333,595 to 334,293 _0327 Dsui_0328: Dsui_0328 - fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly, at 334,576 to 336,405 _0328 Position (kb) 333 334 335Strain fitness (log2 ratio) -1 0 1 2at 332.603 kb on - strand, within Dsui_0326at 332.614 kb on - strand, within Dsui_0326at 332.647 kb on - strand, within Dsui_0326at 332.684 kb on - strand, within Dsui_0326at 332.733 kb on + strand, within Dsui_0326at 332.734 kb on - strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.766 kb on + strand, within Dsui_0326at 332.774 kb on - strand, within Dsui_0326at 332.774 kb on - strand, within Dsui_0326at 332.790 kb on - strand, within Dsui_0326at 332.822 kb on - strand, within Dsui_0326at 332.838 kb on - strand, within Dsui_0326at 332.899 kb on - strand, within Dsui_0326at 332.900 kb on - strand, within Dsui_0326at 332.906 kb on - strand, within Dsui_0326at 333.027 kb on - strand, within Dsui_0326at 333.056 kb on - strand, within Dsui_0326at 333.102 kb on - strand, within Dsui_0326at 333.157 kb on + strand, within Dsui_0326at 333.196 kb on + strand, within Dsui_0326at 333.216 kb on + strand, within Dsui_0326at 333.274 kb on + strand, within Dsui_0326at 333.275 kb on - strandat 333.285 kb on - strandat 333.425 kb on - strandat 333.467 kb on + strandat 333.475 kb on - strandat 333.488 kb on + strandat 333.496 kb on - strandat 333.566 kb on + strandat 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.820 kb on - strand, within Dsui_0327at 333.826 kb on - strand, within Dsui_0327at 334.120 kb on - strand, within Dsui_0327at 334.209 kb on - strand, within Dsui_0327at 334.239 kb on - strandat 334.241 kb on - strandat 334.281 kb on - strandat 334.300 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.391 kb on - strandat 334.430 kb on + strandat 334.454 kb on + strandat 334.484 kb on - strandat 334.500 kb on + strandat 334.592 kb on + strandat 334.602 kb on + strandat 334.623 kb on - strandat 334.629 kb on - strandat 334.658 kb on + strandat 334.675 kb on - strandat 334.709 kb on + strandat 334.709 kb on + strandat 334.712 kb on - strandat 334.717 kb on - strandat 334.776 kb on + strand, within Dsui_0328at 334.783 kb on + strand, within Dsui_0328at 334.783 kb on + strand, within Dsui_0328at 334.791 kb on - strand, within Dsui_0328at 334.885 kb on - strand, within Dsui_0328at 334.907 kb on + strand, within Dsui_0328at 334.915 kb on - strand, within Dsui_0328at 334.915 kb on - strand, within Dsui_0328at 335.017 kb on - strand, within Dsui_0328at 335.031 kb on + strand, within Dsui_0328at 335.044 kb on - strand, within Dsui_0328at 335.059 kb on - strandat 335.065 kb on + strand, within Dsui_0328at 335.079 kb on - strand, within Dsui_0328at 335.126 kb on + strand, within Dsui_0328at 335.153 kb on + strand, within Dsui_0328at 335.220 kb on - strand, within Dsui_0328

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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332,603 - Dsui_0326 0.61 -0.2
332,614 - Dsui_0326 0.62 +0.1
332,647 - Dsui_0326 0.63 -0.2
332,684 - Dsui_0326 0.65 -0.2
332,733 + Dsui_0326 0.67 -1.4
332,734 - Dsui_0326 0.67 -0.2
332,766 + Dsui_0326 0.68 +1.8
332,766 + Dsui_0326 0.68 +0.1
332,766 + Dsui_0326 0.68 -0.4
332,774 - Dsui_0326 0.69 +0.4
332,774 - Dsui_0326 0.69 +0.0
332,790 - Dsui_0326 0.69 +0.1
332,822 - Dsui_0326 0.71 +0.1
332,838 - Dsui_0326 0.71 +0.3
332,899 - Dsui_0326 0.74 +0.5
332,900 - Dsui_0326 0.74 +0.2
332,906 - Dsui_0326 0.74 +0.3
333,027 - Dsui_0326 0.79 -0.2
333,056 - Dsui_0326 0.81 -0.1
333,102 - Dsui_0326 0.83 +0.5
333,157 + Dsui_0326 0.85 -0.3
333,196 + Dsui_0326 0.87 +0.4
333,216 + Dsui_0326 0.87 -0.0
333,274 + Dsui_0326 0.90 +0.7
333,275 - +0.4
333,285 - +1.0
333,425 - +0.3
333,467 + -0.0
333,475 - +0.0
333,488 + +0.2
333,496 - -0.1
333,566 + -0.3
333,820 - Dsui_0327 0.32 +0.1
333,820 - Dsui_0327 0.32 -0.0
333,820 - Dsui_0327 0.32 -0.6
333,826 - Dsui_0327 0.33 +0.1
334,120 - Dsui_0327 0.75 -0.9
334,209 - Dsui_0327 0.88 -1.0
334,239 - -0.1
334,241 - -0.5
334,281 - +0.1
334,300 - -1.4
334,391 - -0.5
334,391 - +0.3
334,391 - +1.7
334,391 - +0.7
334,391 - +0.8
334,430 + +0.1
334,454 + +0.3
334,484 - +0.7
334,500 + +0.7
334,592 + -0.3
334,602 + -1.6
334,623 - -0.2
334,629 - -0.1
334,658 + +0.6
334,675 - +0.7
334,709 + +0.2
334,709 + -0.2
334,712 - -0.3
334,717 - -0.6
334,776 + Dsui_0328 0.11 -0.9
334,783 + Dsui_0328 0.11 +0.1
334,783 + Dsui_0328 0.11 -0.1
334,791 - Dsui_0328 0.12 -0.0
334,885 - Dsui_0328 0.17 +1.2
334,907 + Dsui_0328 0.18 +0.3
334,915 - Dsui_0328 0.19 -0.6
334,915 - Dsui_0328 0.19 -0.4
335,017 - Dsui_0328 0.24 -0.4
335,031 + Dsui_0328 0.25 +1.7
335,044 - Dsui_0328 0.26 -1.3
335,059 - +0.7
335,065 + Dsui_0328 0.27 -0.1
335,079 - Dsui_0328 0.27 +0.1
335,126 + Dsui_0328 0.30 +0.3
335,153 + Dsui_0328 0.32 +0.2
335,220 - Dsui_0328 0.35 +0.5

Or see this region's nucleotide sequence