Strain Fitness in Dechlorosoma suillum PS around Dsui_0134

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0133 and Dsui_0134 are separated by 471 nucleotidesDsui_0134 and Dsui_0135 overlap by 1 nucleotides Dsui_0133: Dsui_0133 - hypothetical protein, at 134,449 to 135,519 _0133 Dsui_0134: Dsui_0134 - negative regulator of beta-lactamase expression, at 135,991 to 136,563 _0134 Dsui_0135: Dsui_0135 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 136,563 to 137,936 _0135 Position (kb) 135 136 137Strain fitness (log2 ratio) -2 -1 0 1at 135.453 kb on - strandat 135.472 kb on + strandat 135.494 kb on + strandat 135.572 kb on + strandat 135.580 kb on - strandat 135.727 kb on + strandat 135.735 kb on - strandat 135.735 kb on - strandat 135.812 kb on - strandat 135.819 kb on - strandat 135.863 kb on + strandat 135.894 kb on + strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.902 kb on - strandat 135.924 kb on + strandat 135.926 kb on - strandat 135.926 kb on - strandat 135.932 kb on - strandat 135.932 kb on - strandat 135.947 kb on - strandat 136.005 kb on - strandat 136.007 kb on + strandat 136.007 kb on + strandat 136.015 kb on - strandat 136.015 kb on - strandat 136.023 kb on - strandat 136.068 kb on - strand, within Dsui_0134at 136.073 kb on + strand, within Dsui_0134at 136.081 kb on - strand, within Dsui_0134at 136.129 kb on - strand, within Dsui_0134at 136.152 kb on - strandat 136.185 kb on + strand, within Dsui_0134at 136.260 kb on - strand, within Dsui_0134at 136.260 kb on - strand, within Dsui_0134at 136.270 kb on - strand, within Dsui_0134at 136.299 kb on + strandat 136.378 kb on - strand, within Dsui_0134at 136.384 kb on + strand, within Dsui_0134at 136.445 kb on + strand, within Dsui_0134at 136.456 kb on + strand, within Dsui_0134at 136.489 kb on - strand, within Dsui_0134at 136.518 kb on + strandat 136.601 kb on + strandat 136.668 kb on - strandat 136.709 kb on - strand, within Dsui_0135at 136.771 kb on - strand, within Dsui_0135at 136.783 kb on - strand, within Dsui_0135at 136.793 kb on + strand, within Dsui_0135at 136.811 kb on - strand, within Dsui_0135at 136.811 kb on - strand, within Dsui_0135at 136.811 kb on - strand, within Dsui_0135at 136.938 kb on + strand, within Dsui_0135at 137.100 kb on - strand, within Dsui_0135at 137.102 kb on + strand, within Dsui_0135at 137.155 kb on + strand, within Dsui_0135at 137.221 kb on + strand, within Dsui_0135at 137.229 kb on - strand, within Dsui_0135at 137.322 kb on + strand, within Dsui_0135at 137.350 kb on + strand, within Dsui_0135at 137.412 kb on + strand, within Dsui_0135at 137.420 kb on - strand, within Dsui_0135at 137.454 kb on + strand, within Dsui_0135at 137.515 kb on + strandat 137.526 kb on - strand, within Dsui_0135

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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135,453 - -0.6
135,472 + +0.1
135,494 + +0.7
135,572 + +0.7
135,580 - +0.9
135,727 + +0.5
135,735 - +0.4
135,735 - -0.3
135,812 - +0.3
135,819 - +0.9
135,863 + +0.3
135,894 + -0.2
135,902 - +0.4
135,902 - +0.1
135,902 - -1.3
135,902 - -0.1
135,902 - +0.2
135,924 + -0.1
135,926 - +0.0
135,926 - -0.4
135,932 - +0.1
135,932 - -0.5
135,947 - +0.2
136,005 - -0.3
136,007 + -0.4
136,007 + -1.5
136,015 - -0.5
136,015 - +0.4
136,023 - -0.5
136,068 - Dsui_0134 0.13 +1.4
136,073 + Dsui_0134 0.14 +1.1
136,081 - Dsui_0134 0.16 +0.1
136,129 - Dsui_0134 0.24 +0.2
136,152 - -0.1
136,185 + Dsui_0134 0.34 -0.8
136,260 - Dsui_0134 0.47 +0.2
136,260 - Dsui_0134 0.47 +0.4
136,270 - Dsui_0134 0.49 +0.6
136,299 + +0.3
136,378 - Dsui_0134 0.68 -0.1
136,384 + Dsui_0134 0.69 +0.4
136,445 + Dsui_0134 0.79 +1.2
136,456 + Dsui_0134 0.81 -0.8
136,489 - Dsui_0134 0.87 +1.1
136,518 + +0.1
136,601 + -0.2
136,668 - +0.4
136,709 - Dsui_0135 0.11 -2.1
136,771 - Dsui_0135 0.15 -0.1
136,783 - Dsui_0135 0.16 +0.1
136,793 + Dsui_0135 0.17 -0.2
136,811 - Dsui_0135 0.18 +0.2
136,811 - Dsui_0135 0.18 +0.5
136,811 - Dsui_0135 0.18 +0.7
136,938 + Dsui_0135 0.27 -0.5
137,100 - Dsui_0135 0.39 -1.4
137,102 + Dsui_0135 0.39 +0.3
137,155 + Dsui_0135 0.43 +0.7
137,221 + Dsui_0135 0.48 +0.2
137,229 - Dsui_0135 0.48 +0.2
137,322 + Dsui_0135 0.55 -1.2
137,350 + Dsui_0135 0.57 -1.4
137,412 + Dsui_0135 0.62 +0.5
137,420 - Dsui_0135 0.62 +0.3
137,454 + Dsui_0135 0.65 -1.1
137,515 + -0.3
137,526 - Dsui_0135 0.70 +0.1

Or see this region's nucleotide sequence