Experiment: rich media with hydrogen peroxide 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0105 and Dsui_0106 are separated by 252 nucleotides Dsui_0106 and Dsui_0107 are separated by 149 nucleotides
Dsui_0105: Dsui_0105 - NAD-dependent aldehyde dehydrogenase, at 103,031 to 104,461
_0105
Dsui_0106: Dsui_0106 - hypothetical protein, at 104,714 to 105,490
_0106
Dsui_0107: Dsui_0107 - PDZ domain-containing protein, at 105,640 to 106,716
_0107
Position (kb)
104
105
106 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 103.726 kb on + strand at 103.726 kb on + strand, within Dsui_0105 at 103.734 kb on - strand at 103.734 kb on - strand, within Dsui_0105 at 103.734 kb on - strand, within Dsui_0105 at 103.785 kb on + strand, within Dsui_0105 at 103.829 kb on + strand at 103.830 kb on + strand at 103.926 kb on - strand, within Dsui_0105 at 104.029 kb on - strand at 104.042 kb on - strand, within Dsui_0105 at 104.072 kb on + strand, within Dsui_0105 at 104.073 kb on - strand, within Dsui_0105 at 104.149 kb on - strand, within Dsui_0105 at 104.211 kb on + strand at 104.227 kb on + strand at 104.463 kb on + strand at 104.494 kb on + strand at 104.502 kb on - strand at 104.513 kb on + strand at 104.551 kb on - strand at 104.553 kb on + strand at 104.696 kb on + strand at 104.715 kb on - strand at 104.715 kb on - strand at 104.744 kb on - strand at 104.955 kb on - strand, within Dsui_0106 at 104.965 kb on + strand, within Dsui_0106 at 104.984 kb on + strand at 104.997 kb on - strand, within Dsui_0106 at 105.068 kb on + strand, within Dsui_0106 at 105.076 kb on + strand at 105.113 kb on - strand, within Dsui_0106 at 105.202 kb on + strand, within Dsui_0106 at 105.210 kb on - strand at 105.210 kb on - strand, within Dsui_0106 at 105.275 kb on - strand, within Dsui_0106 at 105.458 kb on - strand at 105.467 kb on + strand at 105.564 kb on - strand at 105.712 kb on + strand at 105.713 kb on - strand at 105.720 kb on - strand at 105.720 kb on - strand at 105.771 kb on - strand at 105.830 kb on + strand, within Dsui_0107 at 105.830 kb on + strand at 105.832 kb on + strand, within Dsui_0107 at 105.832 kb on + strand, within Dsui_0107 at 105.838 kb on - strand at 105.838 kb on - strand at 105.861 kb on + strand, within Dsui_0107 at 105.863 kb on + strand, within Dsui_0107 at 105.889 kb on + strand, within Dsui_0107 at 105.942 kb on + strand, within Dsui_0107 at 105.942 kb on - strand at 105.944 kb on + strand at 105.949 kb on + strand, within Dsui_0107 at 105.949 kb on - strand, within Dsui_0107 at 106.032 kb on - strand, within Dsui_0107 at 106.059 kb on + strand, within Dsui_0107 at 106.073 kb on + strand at 106.096 kb on - strand at 106.126 kb on - strand, within Dsui_0107 at 106.129 kb on + strand, within Dsui_0107 at 106.161 kb on + strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.169 kb on - strand, within Dsui_0107 at 106.172 kb on + strand, within Dsui_0107 at 106.274 kb on + strand at 106.294 kb on - strand at 106.294 kb on - strand, within Dsui_0107 at 106.327 kb on - strand at 106.332 kb on - strand at 106.351 kb on + strand at 106.352 kb on + strand, within Dsui_0107 at 106.354 kb on + strand, within Dsui_0107 at 106.357 kb on - strand, within Dsui_0107 at 106.357 kb on - strand at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand, within Dsui_0107 at 106.397 kb on + strand at 106.405 kb on - strand, within Dsui_0107 at 106.405 kb on - strand, within Dsui_0107 at 106.410 kb on - strand, within Dsui_0107 at 106.452 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM remove 103,726 + +0.1 103,726 + Dsui_0105 0.49 +1.3 103,734 - +0.4 103,734 - Dsui_0105 0.49 +0.3 103,734 - Dsui_0105 0.49 -2.4 103,785 + Dsui_0105 0.53 +0.2 103,829 + +1.7 103,830 + +0.7 103,926 - Dsui_0105 0.63 +0.2 104,029 - +0.1 104,042 - Dsui_0105 0.71 -1.3 104,072 + Dsui_0105 0.73 -0.6 104,073 - Dsui_0105 0.73 +0.7 104,149 - Dsui_0105 0.78 -0.1 104,211 + +0.7 104,227 + +1.3 104,463 + +1.7 104,494 + +1.7 104,502 - -1.6 104,513 + +1.7 104,551 - +1.7 104,553 + +1.7 104,696 + +0.7 104,715 - -0.0 104,715 - -0.3 104,744 - +0.7 104,955 - Dsui_0106 0.31 -0.3 104,965 + Dsui_0106 0.32 +0.9 104,984 + +0.7 104,997 - Dsui_0106 0.36 +0.5 105,068 + Dsui_0106 0.46 -0.9 105,076 + +1.1 105,113 - Dsui_0106 0.51 +1.7 105,202 + Dsui_0106 0.63 +0.7 105,210 - -0.6 105,210 - Dsui_0106 0.64 +0.3 105,275 - Dsui_0106 0.72 +0.1 105,458 - -0.1 105,467 + -0.6 105,564 - -0.9 105,712 + +1.7 105,713 - +1.7 105,720 - +0.7 105,720 - +0.7 105,771 - +0.1 105,830 + Dsui_0107 0.18 -0.5 105,830 + +1.7 105,832 + Dsui_0107 0.18 +0.3 105,832 + Dsui_0107 0.18 +0.4 105,838 - -1.1 105,838 - +3.3 105,861 + Dsui_0107 0.21 +2.0 105,863 + Dsui_0107 0.21 -0.1 105,889 + Dsui_0107 0.23 -0.4 105,942 + Dsui_0107 0.28 +0.1 105,942 - +1.7 105,944 + -0.3 105,949 + Dsui_0107 0.29 -0.3 105,949 - Dsui_0107 0.29 +0.1 106,032 - Dsui_0107 0.36 +0.4 106,059 + Dsui_0107 0.39 +0.4 106,073 + +1.7 106,096 - +0.9 106,126 - Dsui_0107 0.45 -0.3 106,129 + Dsui_0107 0.45 -0.6 106,161 + Dsui_0107 0.48 -2.1 106,169 - Dsui_0107 0.49 +0.2 106,169 - Dsui_0107 0.49 -1.5 106,172 + Dsui_0107 0.49 -0.4 106,274 + +1.1 106,294 - +0.7 106,294 - Dsui_0107 0.61 +0.7 106,327 - +1.3 106,332 - +0.9 106,351 + +1.7 106,352 + Dsui_0107 0.66 -0.7 106,354 + Dsui_0107 0.66 +0.0 106,357 - Dsui_0107 0.67 +0.4 106,357 - +0.4 106,397 + Dsui_0107 0.70 -0.9 106,397 + Dsui_0107 0.70 +0.1 106,397 + -0.3 106,405 - Dsui_0107 0.71 +0.5 106,405 - Dsui_0107 0.71 +0.9 106,410 - Dsui_0107 0.71 -0.2 106,452 - +0.4
Or see this region's nucleotide sequence