Strain Fitness in Dechlorosoma suillum PS around Dsui_0102

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0101 and Dsui_0102 are separated by 45 nucleotidesDsui_0102 and Dsui_0103 are separated by 359 nucleotides Dsui_0101: Dsui_0101 - exonuclease, DNA polymerase III, epsilon subunit family, at 99,453 to 100,919 _0101 Dsui_0102: Dsui_0102 - transcription elongation factor, at 100,965 to 101,414 _0102 Dsui_0103: Dsui_0103 - transcriptional regulator, at 101,774 to 102,364 _0103 Position (kb) 100 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 100.002 kb on - strand, within Dsui_0101at 100.004 kb on + strand, within Dsui_0101at 100.012 kb on - strand, within Dsui_0101at 100.024 kb on + strand, within Dsui_0101at 100.032 kb on - strand, within Dsui_0101at 100.032 kb on - strand, within Dsui_0101at 100.096 kb on + strand, within Dsui_0101at 100.104 kb on - strand, within Dsui_0101at 100.204 kb on - strand, within Dsui_0101at 100.211 kb on + strand, within Dsui_0101at 100.240 kb on - strand, within Dsui_0101at 100.269 kb on - strand, within Dsui_0101at 100.349 kb on + strand, within Dsui_0101at 100.357 kb on + strand, within Dsui_0101at 100.443 kb on - strand, within Dsui_0101at 100.483 kb on + strand, within Dsui_0101at 100.483 kb on + strand, within Dsui_0101at 100.504 kb on + strand, within Dsui_0101at 100.504 kb on + strand, within Dsui_0101at 100.542 kb on - strand, within Dsui_0101at 100.559 kb on - strand, within Dsui_0101at 100.564 kb on - strand, within Dsui_0101at 100.579 kb on - strand, within Dsui_0101at 100.635 kb on - strand, within Dsui_0101at 100.635 kb on - strand, within Dsui_0101at 100.647 kb on - strand, within Dsui_0101at 100.657 kb on - strand, within Dsui_0101at 100.673 kb on + strand, within Dsui_0101at 100.673 kb on + strand, within Dsui_0101at 100.691 kb on - strand, within Dsui_0101at 100.723 kb on + strand, within Dsui_0101at 100.745 kb on + strand, within Dsui_0101at 100.745 kb on + strand, within Dsui_0101at 100.750 kb on + strand, within Dsui_0101at 100.765 kb on - strand, within Dsui_0101at 100.779 kb on + strandat 100.787 kb on - strandat 100.787 kb on - strandat 100.835 kb on + strandat 100.838 kb on + strandat 100.840 kb on + strandat 101.100 kb on + strand, within Dsui_0102at 101.108 kb on - strand, within Dsui_0102at 101.143 kb on + strand, within Dsui_0102at 101.187 kb on + strand, within Dsui_0102at 101.187 kb on + strand, within Dsui_0102at 101.190 kb on + strand, within Dsui_0102at 101.351 kb on - strand, within Dsui_0102at 101.354 kb on + strand, within Dsui_0102at 101.364 kb on + strandat 101.406 kb on - strandat 101.409 kb on + strandat 101.422 kb on + strandat 101.430 kb on - strandat 101.724 kb on - strandat 101.806 kb on + strandat 101.878 kb on - strand, within Dsui_0103at 101.931 kb on - strand, within Dsui_0103at 101.972 kb on + strand, within Dsui_0103at 102.071 kb on - strand, within Dsui_0103at 102.076 kb on - strand, within Dsui_0103at 102.157 kb on + strandat 102.168 kb on + strandat 102.176 kb on - strand, within Dsui_0103at 102.186 kb on - strand, within Dsui_0103at 102.223 kb on + strandat 102.352 kb on - strandat 102.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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100,002 - Dsui_0101 0.37 +0.2
100,004 + Dsui_0101 0.38 +0.4
100,012 - Dsui_0101 0.38 -0.5
100,024 + Dsui_0101 0.39 +0.4
100,032 - Dsui_0101 0.39 -0.5
100,032 - Dsui_0101 0.39 -0.8
100,096 + Dsui_0101 0.44 +0.3
100,104 - Dsui_0101 0.44 -0.1
100,204 - Dsui_0101 0.51 -0.1
100,211 + Dsui_0101 0.52 -0.0
100,240 - Dsui_0101 0.54 +0.3
100,269 - Dsui_0101 0.56 +0.7
100,349 + Dsui_0101 0.61 +0.1
100,357 + Dsui_0101 0.62 -0.9
100,443 - Dsui_0101 0.67 +0.6
100,483 + Dsui_0101 0.70 +0.1
100,483 + Dsui_0101 0.70 -0.3
100,504 + Dsui_0101 0.72 +0.3
100,504 + Dsui_0101 0.72 +0.4
100,542 - Dsui_0101 0.74 +0.2
100,559 - Dsui_0101 0.75 +0.4
100,564 - Dsui_0101 0.76 +0.3
100,579 - Dsui_0101 0.77 +0.4
100,635 - Dsui_0101 0.81 +0.1
100,635 - Dsui_0101 0.81 +0.5
100,647 - Dsui_0101 0.81 +0.4
100,657 - Dsui_0101 0.82 +0.2
100,673 + Dsui_0101 0.83 -0.2
100,673 + Dsui_0101 0.83 -0.2
100,691 - Dsui_0101 0.84 +0.3
100,723 + Dsui_0101 0.87 +0.1
100,745 + Dsui_0101 0.88 +0.4
100,745 + Dsui_0101 0.88 +0.2
100,750 + Dsui_0101 0.88 +0.5
100,765 - Dsui_0101 0.89 -0.1
100,779 + +0.2
100,787 - -1.0
100,787 - -0.2
100,835 + +0.2
100,838 + -0.2
100,840 + +0.2
101,100 + Dsui_0102 0.30 -2.0
101,108 - Dsui_0102 0.32 +0.7
101,143 + Dsui_0102 0.40 -0.5
101,187 + Dsui_0102 0.49 +0.8
101,187 + Dsui_0102 0.49 +1.2
101,190 + Dsui_0102 0.50 +0.2
101,351 - Dsui_0102 0.86 +1.6
101,354 + Dsui_0102 0.86 -0.8
101,364 + +0.7
101,406 - +0.3
101,409 + -0.3
101,422 + -0.3
101,430 - +0.4
101,724 - +0.2
101,806 + +1.7
101,878 - Dsui_0103 0.18 -0.5
101,931 - Dsui_0103 0.27 -0.2
101,972 + Dsui_0103 0.34 +0.7
102,071 - Dsui_0103 0.50 +0.4
102,076 - Dsui_0103 0.51 -0.4
102,157 + +1.1
102,168 + +1.7
102,176 - Dsui_0103 0.68 +1.7
102,186 - Dsui_0103 0.70 +0.3
102,223 + +1.1
102,352 - -0.6
102,368 - +2.7

Or see this region's nucleotide sequence