Strain Fitness in Dechlorosoma suillum PS around Dsui_0079

Experiment: rich media with hydrogen peroxide 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0078 and Dsui_0079 are separated by 50 nucleotidesDsui_0079 and Dsui_0080 are separated by 515 nucleotides Dsui_0078: Dsui_0078 - putative dehydrogenase, at 74,640 to 75,620 _0078 Dsui_0079: Dsui_0079 - pseudaminic acid synthase, at 75,671 to 76,726 _0079 Dsui_0080: Dsui_0080 - pseudaminic acid biosynthesis-associated protein PseG, at 77,242 to 78,381 _0080 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1at 74.680 kb on + strandat 74.688 kb on - strandat 74.719 kb on - strandat 74.721 kb on + strandat 74.739 kb on - strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.799 kb on + strand, within Dsui_0078at 74.807 kb on + strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.807 kb on - strand, within Dsui_0078at 74.870 kb on - strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.903 kb on + strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.916 kb on - strand, within Dsui_0078at 74.920 kb on + strand, within Dsui_0078at 74.928 kb on - strand, within Dsui_0078at 74.930 kb on + strand, within Dsui_0078at 74.978 kb on - strand, within Dsui_0078at 75.012 kb on + strand, within Dsui_0078at 75.019 kb on + strand, within Dsui_0078at 75.049 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.082 kb on + strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.090 kb on - strand, within Dsui_0078at 75.118 kb on + strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.126 kb on - strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.164 kb on + strand, within Dsui_0078at 75.232 kb on - strand, within Dsui_0078at 75.251 kb on - strand, within Dsui_0078at 75.309 kb on + strand, within Dsui_0078at 75.360 kb on + strand, within Dsui_0078at 75.401 kb on + strand, within Dsui_0078at 75.464 kb on - strand, within Dsui_0078at 75.538 kb on - strandat 75.557 kb on - strandat 75.573 kb on - strandat 75.599 kb on - strandat 75.630 kb on + strandat 75.635 kb on + strandat 75.646 kb on + strandat 75.646 kb on + strandat 75.673 kb on + strandat 75.687 kb on + strandat 75.692 kb on + strandat 75.731 kb on + strandat 75.743 kb on + strandat 75.749 kb on - strandat 75.760 kb on - strandat 75.853 kb on + strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.907 kb on - strand, within Dsui_0079at 75.927 kb on + strandat 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.935 kb on - strand, within Dsui_0079at 75.994 kb on + strand, within Dsui_0079at 75.999 kb on + strand, within Dsui_0079at 76.051 kb on - strand, within Dsui_0079at 76.064 kb on - strand, within Dsui_0079at 76.083 kb on + strand, within Dsui_0079at 76.129 kb on + strand, within Dsui_0079at 76.138 kb on - strand, within Dsui_0079at 76.155 kb on - strand, within Dsui_0079at 76.386 kb on + strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.427 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.479 kb on - strand, within Dsui_0079at 76.511 kb on + strand, within Dsui_0079at 76.544 kb on + strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.545 kb on - strand, within Dsui_0079at 76.554 kb on - strand, within Dsui_0079at 76.581 kb on + strand, within Dsui_0079at 76.589 kb on - strand, within Dsui_0079at 76.597 kb on - strand, within Dsui_0079at 76.608 kb on - strand, within Dsui_0079at 76.644 kb on + strandat 76.670 kb on - strandat 76.684 kb on - strandat 76.727 kb on + strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.735 kb on - strandat 76.739 kb on + strandat 76.744 kb on + strandat 76.750 kb on + strandat 76.755 kb on + strandat 76.758 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.763 kb on - strandat 76.777 kb on - strandat 76.902 kb on - strandat 77.267 kb on - strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.324 kb on + strandat 77.332 kb on - strandat 77.334 kb on + strandat 77.417 kb on - strand, within Dsui_0080at 77.506 kb on + strand, within Dsui_0080at 77.523 kb on + strand, within Dsui_0080at 77.549 kb on - strand, within Dsui_0080at 77.555 kb on + strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.563 kb on - strand, within Dsui_0080at 77.572 kb on - strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.580 kb on + strand, within Dsui_0080at 77.588 kb on - strand, within Dsui_0080at 77.611 kb on - strand, within Dsui_0080at 77.693 kb on + strand, within Dsui_0080at 77.701 kb on - strand, within Dsui_0080at 77.708 kb on + strand, within Dsui_0080at 77.716 kb on - strand, within Dsui_0080at 77.719 kb on + strand, within Dsui_0080

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Per-strain Table

Position Strand Gene LocusTag Fraction rich media with hydrogen peroxide 5 mM
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74,680 + -0.3
74,688 - -0.1
74,719 - +0.4
74,721 + -0.0
74,739 - Dsui_0078 0.10 +0.2
74,799 + Dsui_0078 0.16 +0.1
74,799 + Dsui_0078 0.16 -0.8
74,799 + Dsui_0078 0.16 +0.1
74,799 + Dsui_0078 0.16 +0.4
74,799 + Dsui_0078 0.16 -0.0
74,799 + Dsui_0078 0.16 -1.3
74,799 + Dsui_0078 0.16 +0.1
74,807 + Dsui_0078 0.17 +0.2
74,807 - Dsui_0078 0.17 +0.2
74,807 - Dsui_0078 0.17 -0.1
74,870 - Dsui_0078 0.23 +0.1
74,903 + Dsui_0078 0.27 +0.2
74,903 + Dsui_0078 0.27 +0.3
74,916 - Dsui_0078 0.28 -0.0
74,916 - Dsui_0078 0.28 +0.3
74,920 + Dsui_0078 0.29 +0.1
74,928 - Dsui_0078 0.29 +0.3
74,930 + Dsui_0078 0.30 +0.1
74,978 - Dsui_0078 0.34 +0.4
75,012 + Dsui_0078 0.38 +0.0
75,019 + Dsui_0078 0.39 +0.1
75,049 + Dsui_0078 0.42 -0.1
75,082 + Dsui_0078 0.45 +0.3
75,082 + Dsui_0078 0.45 -0.0
75,082 + Dsui_0078 0.45 +0.0
75,090 - Dsui_0078 0.46 +0.2
75,090 - Dsui_0078 0.46 +0.1
75,090 - Dsui_0078 0.46 -0.1
75,118 + Dsui_0078 0.49 -0.4
75,126 - Dsui_0078 0.50 +0.2
75,126 - Dsui_0078 0.50 +0.2
75,126 - Dsui_0078 0.50 +0.4
75,126 - Dsui_0078 0.50 +0.2
75,164 + Dsui_0078 0.53 -0.6
75,164 + Dsui_0078 0.53 +0.2
75,232 - Dsui_0078 0.60 -0.0
75,251 - Dsui_0078 0.62 +0.3
75,309 + Dsui_0078 0.68 +0.0
75,360 + Dsui_0078 0.73 -0.1
75,401 + Dsui_0078 0.78 +0.0
75,464 - Dsui_0078 0.84 +0.1
75,538 - +0.3
75,557 - +0.6
75,573 - +0.1
75,599 - -0.1
75,630 + -0.9
75,635 + -0.2
75,646 + -0.3
75,646 + -0.4
75,673 + -0.2
75,687 + -0.1
75,692 + -0.2
75,731 + -0.4
75,743 + -0.1
75,749 - -0.1
75,760 - +0.0
75,853 + Dsui_0079 0.17 -0.4
75,907 - Dsui_0079 0.22 -0.1
75,907 - Dsui_0079 0.22 -0.1
75,927 + -0.3
75,935 - Dsui_0079 0.25 -0.0
75,935 - Dsui_0079 0.25 +0.0
75,935 - Dsui_0079 0.25 -0.2
75,994 + Dsui_0079 0.31 -0.6
75,999 + Dsui_0079 0.31 -0.1
76,051 - Dsui_0079 0.36 +0.0
76,064 - Dsui_0079 0.37 +0.0
76,083 + Dsui_0079 0.39 -0.1
76,129 + Dsui_0079 0.43 -0.3
76,138 - Dsui_0079 0.44 -0.3
76,155 - Dsui_0079 0.46 -0.2
76,386 + Dsui_0079 0.68 -1.1
76,427 - Dsui_0079 0.72 +0.9
76,427 - Dsui_0079 0.72 -0.0
76,479 - Dsui_0079 0.77 -0.2
76,479 - Dsui_0079 0.77 -0.0
76,511 + Dsui_0079 0.80 -0.8
76,544 + Dsui_0079 0.83 -0.3
76,545 - Dsui_0079 0.83 +0.0
76,545 - Dsui_0079 0.83 -0.1
76,554 - Dsui_0079 0.84 +0.1
76,581 + Dsui_0079 0.86 +0.2
76,589 - Dsui_0079 0.87 -0.5
76,597 - Dsui_0079 0.88 -0.2
76,608 - Dsui_0079 0.89 +0.0
76,644 + -0.7
76,670 - +0.0
76,684 - -0.1
76,727 + -0.1
76,735 - -0.3
76,735 - -0.2
76,735 - -0.2
76,739 + +0.5
76,744 + -1.1
76,750 + -0.5
76,755 + +0.0
76,758 - -0.3
76,763 - -0.1
76,763 - -1.2
76,763 - -0.5
76,777 - -2.3
76,902 - -1.9
77,267 - -0.4
77,324 + -0.1
77,324 + +0.0
77,324 + -0.2
77,324 + +0.1
77,332 - -0.4
77,334 + -0.7
77,417 - Dsui_0080 0.15 -0.4
77,506 + Dsui_0080 0.23 -0.5
77,523 + Dsui_0080 0.25 -0.3
77,549 - Dsui_0080 0.27 -0.2
77,555 + Dsui_0080 0.27 -0.4
77,563 - Dsui_0080 0.28 -0.1
77,563 - Dsui_0080 0.28 -0.2
77,572 - Dsui_0080 0.29 -0.3
77,580 + Dsui_0080 0.30 -0.1
77,580 + Dsui_0080 0.30 -0.1
77,580 + Dsui_0080 0.30 +0.0
77,580 + Dsui_0080 0.30 -0.8
77,588 - Dsui_0080 0.30 +0.3
77,611 - Dsui_0080 0.32 -0.5
77,693 + Dsui_0080 0.40 -0.1
77,701 - Dsui_0080 0.40 -0.0
77,708 + Dsui_0080 0.41 +0.0
77,716 - Dsui_0080 0.42 -0.1
77,719 + Dsui_0080 0.42 -0.0

Or see this region's nucleotide sequence