Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3615 and Shew_3616 are separated by 20 nucleotides Shew_3616 and Shew_3617 are separated by 71 nucleotides Shew_3617 and Shew_3618 are separated by 2 nucleotides
Shew_3615: Shew_3615 - general secretion pathway protein H (RefSeq), at 4,311,936 to 4,312,514
_3615
Shew_3616: Shew_3616 - general secretion pathway protein G (RefSeq), at 4,312,535 to 4,312,969
_3616
Shew_3617: Shew_3617 - general secretion pathway protein F (RefSeq), at 4,313,041 to 4,314,261
_3617
Shew_3618: Shew_3618 - general secretory pathway protein E (RefSeq), at 4,314,264 to 4,315,835
_3618
Position (kb) 4313
4314
4315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4312.409 kb on - strand, within Shew_3615 at 4312.526 kb on + strand at 4312.534 kb on - strand at 4312.625 kb on - strand, within Shew_3616 at 4312.975 kb on - strand at 4313.153 kb on - strand at 4313.153 kb on - strand at 4313.301 kb on + strand, within Shew_3617 at 4313.594 kb on - strand, within Shew_3617 at 4313.817 kb on - strand, within Shew_3617 at 4314.562 kb on - strand, within Shew_3618 at 4314.724 kb on + strand, within Shew_3618 at 4314.789 kb on - strand, within Shew_3618 at 4314.850 kb on + strand, within Shew_3618 at 4314.850 kb on + strand, within Shew_3618 at 4314.861 kb on + strand, within Shew_3618 at 4314.956 kb on + strand, within Shew_3618
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 4,312,409 - Shew_3615 0.82 +0.4 4,312,526 + -0.6 4,312,534 - +0.4 4,312,625 - Shew_3616 0.21 -1.4 4,312,975 - -1.2 4,313,153 - -1.9 4,313,153 - +1.4 4,313,301 + Shew_3617 0.21 +0.4 4,313,594 - Shew_3617 0.45 -1.8 4,313,817 - Shew_3617 0.64 +0.4 4,314,562 - Shew_3618 0.19 -0.8 4,314,724 + Shew_3618 0.29 +2.4 4,314,789 - Shew_3618 0.33 -0.2 4,314,850 + Shew_3618 0.37 +1.0 4,314,850 + Shew_3618 0.37 -0.9 4,314,861 + Shew_3618 0.38 -2.1 4,314,956 + Shew_3618 0.44 +1.3
Or see this region's nucleotide sequence