Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3576 and Shew_3577 are separated by 304 nucleotides Shew_3577 and Shew_3578 are separated by 16 nucleotides Shew_3578 and Shew_3579 overlap by 17 nucleotides Shew_3579 and Shew_3580 are separated by 211 nucleotides
Shew_3576: Shew_3576 - cysteine dioxygenase type I (RefSeq), at 4,273,940 to 4,274,614
_3576
Shew_3577: Shew_3577 - RNA methyltransferase (RefSeq), at 4,274,919 to 4,275,383
_3577
Shew_3578: Shew_3578 - hypothetical protein (RefSeq), at 4,275,400 to 4,275,909
_3578
Shew_3579: Shew_3579 - hypothetical protein (RefSeq), at 4,275,893 to 4,276,444
_3579
Shew_3580: Shew_3580 - peptidase M16 domain-containing protein (RefSeq), at 4,276,656 to 4,278,104
_3580
Position (kb) 4275
4276 Strain fitness (log2 ratio) -1
0
1 at 4274.486 kb on - strand, within Shew_3576 at 4274.530 kb on + strand, within Shew_3576 at 4274.632 kb on - strand at 4274.834 kb on + strand at 4274.836 kb on + strand at 4274.836 kb on + strand at 4274.844 kb on - strand at 4274.847 kb on - strand at 4275.307 kb on + strand, within Shew_3577 at 4275.315 kb on - strand, within Shew_3577 at 4275.315 kb on - strand, within Shew_3577 at 4275.839 kb on - strand, within Shew_3578 at 4275.839 kb on - strand, within Shew_3578 at 4275.972 kb on + strand, within Shew_3579 at 4275.980 kb on - strand, within Shew_3579 at 4276.096 kb on + strand, within Shew_3579 at 4276.096 kb on + strand, within Shew_3579 at 4276.291 kb on + strand, within Shew_3579 at 4276.299 kb on - strand, within Shew_3579 at 4276.363 kb on + strand, within Shew_3579 at 4276.371 kb on - strand, within Shew_3579 at 4276.475 kb on - strand at 4276.476 kb on + strand at 4276.767 kb on - strand at 4276.816 kb on - strand, within Shew_3580
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 4,274,486 - Shew_3576 0.81 +0.1 4,274,530 + Shew_3576 0.87 +0.4 4,274,632 - -0.0 4,274,834 + -0.1 4,274,836 + +0.1 4,274,836 + -0.9 4,274,844 - -1.2 4,274,847 - +0.3 4,275,307 + Shew_3577 0.83 +0.0 4,275,315 - Shew_3577 0.85 +0.2 4,275,315 - Shew_3577 0.85 -0.3 4,275,839 - Shew_3578 0.86 -0.2 4,275,839 - Shew_3578 0.86 -1.2 4,275,972 + Shew_3579 0.14 +0.2 4,275,980 - Shew_3579 0.16 -0.1 4,276,096 + Shew_3579 0.37 -0.4 4,276,096 + Shew_3579 0.37 +0.3 4,276,291 + Shew_3579 0.72 +0.1 4,276,299 - Shew_3579 0.74 -0.6 4,276,363 + Shew_3579 0.85 -0.0 4,276,371 - Shew_3579 0.87 -0.3 4,276,475 - +0.4 4,276,476 + +0.6 4,276,767 - +1.4 4,276,816 - Shew_3580 0.11 -0.3
Or see this region's nucleotide sequence