Strain Fitness in Shewanella loihica PV-4 around Shew_3423

Experiment: A22 0.005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3422 and Shew_3423 are separated by 477 nucleotidesShew_3423 and Shew_3424 are separated by 109 nucleotides Shew_3422: Shew_3422 - uroporphyrinogen decarboxylase (RefSeq), at 4,077,352 to 4,078,416 _3422 Shew_3423: Shew_3423 - anti-RNA polymerase sigma 70 factor (RefSeq), at 4,078,894 to 4,079,364 _3423 Shew_3424: Shew_3424 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase (RefSeq), at 4,079,474 to 4,082,071 _3424 Position (kb) 4078 4079 4080Strain fitness (log2 ratio) -1 0 1at 4078.589 kb on - strandat 4078.897 kb on - strandat 4078.970 kb on + strand, within Shew_3423

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
remove
4,078,589 - +0.3
4,078,897 - +0.5
4,078,970 + Shew_3423 0.16 -0.7

Or see this region's nucleotide sequence