Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2777 and Shew_2778 are separated by 84 nucleotides Shew_2778 and Shew_2779 are separated by 327 nucleotides
Shew_2777: Shew_2777 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,283,298 to 3,284,653
_2777
Shew_2778: Shew_2778 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 3,284,738 to 3,287,770
_2778
Shew_2779: Shew_2779 - amino acid ABC transporter (RefSeq), at 3,288,098 to 3,288,907
_2779
Position (kb)
3284
3285
3286
3287
3288 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3283.739 kb on - strand, within Shew_2777 at 3283.764 kb on - strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.788 kb on + strand, within Shew_2777 at 3283.796 kb on - strand, within Shew_2777 at 3284.049 kb on + strand, within Shew_2777 at 3284.049 kb on + strand, within Shew_2777 at 3284.290 kb on - strand, within Shew_2777 at 3284.494 kb on - strand, within Shew_2777 at 3284.731 kb on + strand at 3284.739 kb on - strand at 3284.810 kb on - strand at 3285.060 kb on - strand, within Shew_2778 at 3285.094 kb on + strand, within Shew_2778 at 3285.328 kb on + strand, within Shew_2778 at 3285.541 kb on + strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.676 kb on - strand, within Shew_2778 at 3285.722 kb on + strand, within Shew_2778 at 3285.730 kb on - strand, within Shew_2778 at 3285.744 kb on + strand, within Shew_2778 at 3285.825 kb on - strand, within Shew_2778 at 3286.495 kb on - strand, within Shew_2778 at 3286.760 kb on + strand, within Shew_2778 at 3286.789 kb on - strand, within Shew_2778 at 3287.022 kb on + strand, within Shew_2778 at 3287.415 kb on + strand, within Shew_2778 at 3287.562 kb on - strand at 3287.916 kb on - strand at 3288.391 kb on + strand, within Shew_2779
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 3,283,739 - Shew_2777 0.33 +0.1 3,283,764 - Shew_2777 0.34 +2.1 3,283,788 + Shew_2777 0.36 -0.1 3,283,788 + Shew_2777 0.36 -0.1 3,283,788 + Shew_2777 0.36 -1.0 3,283,796 - Shew_2777 0.37 -0.7 3,284,049 + Shew_2777 0.55 -0.3 3,284,049 + Shew_2777 0.55 +0.6 3,284,290 - Shew_2777 0.73 +0.0 3,284,494 - Shew_2777 0.88 -0.0 3,284,731 + +0.1 3,284,739 - +0.6 3,284,810 - +0.3 3,285,060 - Shew_2778 0.11 -0.1 3,285,094 + Shew_2778 0.12 -0.1 3,285,328 + Shew_2778 0.19 +0.1 3,285,541 + Shew_2778 0.26 -1.5 3,285,676 - Shew_2778 0.31 +1.3 3,285,676 - Shew_2778 0.31 +0.2 3,285,676 - Shew_2778 0.31 +0.5 3,285,722 + Shew_2778 0.32 +0.2 3,285,730 - Shew_2778 0.33 +2.5 3,285,744 + Shew_2778 0.33 +0.7 3,285,825 - Shew_2778 0.36 +0.3 3,286,495 - Shew_2778 0.58 +1.2 3,286,760 + Shew_2778 0.67 +0.0 3,286,789 - Shew_2778 0.68 +0.5 3,287,022 + Shew_2778 0.75 +0.5 3,287,415 + Shew_2778 0.88 -3.2 3,287,562 - +0.2 3,287,916 - -0.2 3,288,391 + Shew_2779 0.36 +0.5
Or see this region's nucleotide sequence