Strain Fitness in Shewanella loihica PV-4 around Shew_1382

Experiment: A22 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntflhF and Shew_1382 overlap by 26 nucleotidesShew_1382 and fliA overlap by 8 nucleotidesfliA and Shew_1384 are separated by 42 nucleotides Shew_1381: flhF - flagellar biosynthesis regulator FlhF (RefSeq), at 1,590,430 to 1,591,854 flhF Shew_1382: Shew_1382 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,591,829 to 1,592,740 _1382 Shew_1383: fliA - flagellar biosynthesis sigma factor (RefSeq), at 1,592,733 to 1,593,452 fliA Shew_1384: Shew_1384 - response regulator receiver protein (RefSeq), at 1,593,495 to 1,593,878 _1384 Position (kb) 1591 1592 1593Strain fitness (log2 ratio) -3 -2 -1 0 1at 1591.095 kb on + strand, within flhFat 1591.736 kb on + strandat 1592.030 kb on + strand, within Shew_1382at 1592.144 kb on - strand, within Shew_1382at 1592.213 kb on + strand, within Shew_1382at 1592.872 kb on - strand, within fliAat 1592.874 kb on + strand, within fliAat 1593.035 kb on - strand, within fliAat 1593.695 kb on + strand, within Shew_1384

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.005 mg/ml
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1,591,095 + flhF Shew_1381 0.47 +0.6
1,591,736 + -0.4
1,592,030 + Shew_1382 0.22 -3.4
1,592,144 - Shew_1382 0.35 -1.2
1,592,213 + Shew_1382 0.42 -2.5
1,592,872 - fliA Shew_1383 0.19 -0.4
1,592,874 + fliA Shew_1383 0.20 -0.6
1,593,035 - fliA Shew_1383 0.42 -1.1
1,593,695 + Shew_1384 0.52 +0.2

Or see this region's nucleotide sequence