Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0755 and Shew_0756 are separated by 211 nucleotides Shew_0756 and Shew_0757 are separated by 246 nucleotides Shew_0757 and Shew_0758 are separated by 188 nucleotides
Shew_0755: Shew_0755 - fructose-1,6-bisphosphate aldolase (RefSeq), at 856,859 to 857,923
_0755
Shew_0756: Shew_0756 - hypothetical protein (RefSeq), at 858,135 to 858,875
_0756
Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577
_0757
Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287
_0758
Position (kb) 858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 857.257 kb on + strand, within Shew_0755 at 857.265 kb on - strand, within Shew_0755 at 857.808 kb on - strand, within Shew_0755 at 857.878 kb on + strand at 857.891 kb on - strand at 858.583 kb on - strand, within Shew_0756 at 858.629 kb on + strand, within Shew_0756 at 859.227 kb on + strand, within Shew_0757 at 859.396 kb on - strand, within Shew_0757 at 859.474 kb on - strand, within Shew_0757 at 859.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 857,257 + Shew_0755 0.37 +1.6 857,265 - Shew_0755 0.38 +2.0 857,808 - Shew_0755 0.89 +1.9 857,878 + +2.0 857,891 - +1.9 858,583 - Shew_0756 0.60 -0.3 858,629 + Shew_0756 0.67 -3.0 859,227 + Shew_0757 0.23 +1.1 859,396 - Shew_0757 0.60 +1.0 859,474 - Shew_0757 0.77 +0.2 859,686 - +0.7
Or see this region's nucleotide sequence