Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0694 and Shew_0695 are separated by 181 nucleotides Shew_0695 and Shew_0696 are separated by 226 nucleotides
Shew_0694: Shew_0694 - hypothetical protein (RefSeq), at 787,511 to 788,452
_0694
Shew_0695: Shew_0695 - hypothetical protein (RefSeq), at 788,634 to 788,849
_0695
Shew_0696: Shew_0696 - ribokinase (RefSeq), at 789,076 to 789,990
_0696
Position (kb) 788
789 Strain fitness (log2 ratio) -1
0
1 at 787.717 kb on - strand, within Shew_0694 at 787.765 kb on + strand, within Shew_0694 at 787.940 kb on - strand, within Shew_0694 at 788.002 kb on + strand, within Shew_0694 at 788.222 kb on - strand, within Shew_0694 at 788.342 kb on + strand, within Shew_0694 at 788.342 kb on + strand, within Shew_0694 at 788.432 kb on + strand at 788.452 kb on + strand at 788.524 kb on + strand at 788.771 kb on + strand, within Shew_0695 at 789.059 kb on - strand at 789.059 kb on - strand at 789.072 kb on - strand at 789.164 kb on - strand at 789.251 kb on + strand, within Shew_0696 at 789.251 kb on + strand, within Shew_0696 at 789.274 kb on - strand, within Shew_0696 at 789.293 kb on + strand, within Shew_0696 at 789.301 kb on - strand, within Shew_0696 at 789.306 kb on - strand, within Shew_0696 at 789.321 kb on + strand, within Shew_0696 at 789.396 kb on + strand, within Shew_0696 at 789.600 kb on + strand, within Shew_0696 at 789.608 kb on - strand, within Shew_0696 at 789.771 kb on - strand, within Shew_0696
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 787,717 - Shew_0694 0.22 -0.5 787,765 + Shew_0694 0.27 -0.1 787,940 - Shew_0694 0.46 +0.4 788,002 + Shew_0694 0.52 -0.1 788,222 - Shew_0694 0.75 -0.1 788,342 + Shew_0694 0.88 +0.4 788,342 + Shew_0694 0.88 +0.3 788,432 + -0.7 788,452 + -0.9 788,524 + -0.0 788,771 + Shew_0695 0.63 -0.7 789,059 - +0.3 789,059 - -0.1 789,072 - -0.1 789,164 - +0.3 789,251 + Shew_0696 0.19 +0.6 789,251 + Shew_0696 0.19 -0.3 789,274 - Shew_0696 0.22 +0.5 789,293 + Shew_0696 0.24 -0.1 789,301 - Shew_0696 0.25 +0.1 789,306 - Shew_0696 0.25 -0.6 789,321 + Shew_0696 0.27 +0.2 789,396 + Shew_0696 0.35 +0.2 789,600 + Shew_0696 0.57 +0.1 789,608 - Shew_0696 0.58 -0.3 789,771 - Shew_0696 0.76 -0.2
Or see this region's nucleotide sequence