Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0680 and Shew_0681 are separated by 109 nucleotides Shew_0681 and Shew_0682 are separated by 75 nucleotides
Shew_0680: Shew_0680 - LysR family transcriptional regulator (RefSeq), at 774,193 to 775,065
_0680
Shew_0681: Shew_0681 - penicillin V acylase-like protein (RefSeq), at 775,175 to 776,254
_0681
Shew_0682: Shew_0682 - major facilitator superfamily permease (RefSeq), at 776,330 to 777,433
_0682
Position (kb) 775
776
777 Strain fitness (log2 ratio) -1
0
1 at 774.238 kb on + strand at 774.529 kb on + strand, within Shew_0680 at 774.613 kb on - strand, within Shew_0680 at 774.699 kb on + strand, within Shew_0680 at 774.755 kb on + strand, within Shew_0680 at 775.320 kb on - strand, within Shew_0681 at 775.402 kb on + strand, within Shew_0681 at 775.410 kb on - strand, within Shew_0681 at 775.450 kb on + strand, within Shew_0681 at 775.557 kb on - strand, within Shew_0681 at 775.711 kb on + strand, within Shew_0681 at 775.719 kb on - strand, within Shew_0681 at 775.779 kb on + strand, within Shew_0681 at 775.859 kb on - strand, within Shew_0681 at 775.929 kb on + strand, within Shew_0681 at 775.932 kb on - strand, within Shew_0681 at 776.042 kb on + strand, within Shew_0681 at 776.555 kb on - strand, within Shew_0682 at 776.737 kb on - strand, within Shew_0682 at 777.027 kb on - strand, within Shew_0682
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 774,238 + -0.3 774,529 + Shew_0680 0.38 +0.2 774,613 - Shew_0680 0.48 -0.4 774,699 + Shew_0680 0.58 -0.2 774,755 + Shew_0680 0.64 +1.3 775,320 - Shew_0681 0.13 +0.3 775,402 + Shew_0681 0.21 +0.1 775,410 - Shew_0681 0.22 -0.2 775,450 + Shew_0681 0.25 +0.4 775,557 - Shew_0681 0.35 +1.2 775,711 + Shew_0681 0.50 -0.0 775,719 - Shew_0681 0.50 -0.8 775,779 + Shew_0681 0.56 +0.2 775,859 - Shew_0681 0.63 +0.5 775,929 + Shew_0681 0.70 +0.5 775,932 - Shew_0681 0.70 +0.9 776,042 + Shew_0681 0.80 +0.9 776,555 - Shew_0682 0.20 +0.1 776,737 - Shew_0682 0.37 -0.0 777,027 - Shew_0682 0.63 +0.6
Or see this region's nucleotide sequence