Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0458 and Shew_0459 are separated by 240 nucleotides Shew_0459 and Shew_0460 are separated by 222 nucleotides
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Shew_0459: Shew_0459 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 512,269 to 515,961
_0459
Shew_0460: Shew_0460 - hypothetical protein (RefSeq), at 516,184 to 518,583
_0460
Position (kb) 512
513
514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2 at 511.310 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.409 kb on - strand, within Shew_0458 at 511.521 kb on - strand, within Shew_0458 at 511.663 kb on - strand, within Shew_0458 at 511.663 kb on + strand, within Shew_0458 at 511.850 kb on + strand, within Shew_0458 at 511.860 kb on + strand, within Shew_0458 at 511.913 kb on + strand at 511.921 kb on - strand at 511.923 kb on + strand at 511.931 kb on - strand at 512.133 kb on - strand at 512.140 kb on - strand at 513.185 kb on + strand, within Shew_0459 at 513.185 kb on + strand, within Shew_0459 at 513.195 kb on + strand, within Shew_0459 at 514.671 kb on + strand, within Shew_0459 at 515.002 kb on + strand, within Shew_0459 at 515.010 kb on - strand, within Shew_0459 at 515.070 kb on + strand, within Shew_0459 at 515.815 kb on - strand at 516.098 kb on - strand at 516.588 kb on + strand, within Shew_0460 at 516.667 kb on - strand, within Shew_0460 at 516.680 kb on + strand, within Shew_0460 at 516.961 kb on + strand, within Shew_0460
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 511,310 + Shew_0458 0.48 -0.5 511,310 + Shew_0458 0.48 -0.1 511,409 - Shew_0458 0.56 +0.1 511,521 - Shew_0458 0.64 +0.1 511,663 - Shew_0458 0.74 +2.6 511,663 + Shew_0458 0.74 -1.3 511,850 + Shew_0458 0.87 -0.1 511,860 + Shew_0458 0.88 +0.1 511,913 + -0.0 511,921 - +0.2 511,923 + +0.6 511,931 - -0.3 512,133 - -0.3 512,140 - +0.0 513,185 + Shew_0459 0.25 -1.7 513,185 + Shew_0459 0.25 -1.9 513,195 + Shew_0459 0.25 -0.1 514,671 + Shew_0459 0.65 -0.5 515,002 + Shew_0459 0.74 -1.1 515,010 - Shew_0459 0.74 +1.2 515,070 + Shew_0459 0.76 -1.3 515,815 - -0.3 516,098 - +0.0 516,588 + Shew_0460 0.17 +0.4 516,667 - Shew_0460 0.20 +0.5 516,680 + Shew_0460 0.21 -0.5 516,961 + Shew_0460 0.32 -0.0
Or see this region's nucleotide sequence