Experiment: A22 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0277 and Shew_0278 are separated by 287 nucleotides Shew_0278 and Shew_0279 are separated by 43 nucleotides Shew_0279 and Shew_0280 are separated by 207 nucleotides
Shew_0277: Shew_0277 - TetR family transcriptional regulator (RefSeq), at 294,605 to 295,390
_0277
Shew_0278: Shew_0278 - branched-chain amino acid aminotransferase (RefSeq), at 295,678 to 296,769
_0278
Shew_0279: Shew_0279 - hypothetical protein (RefSeq), at 296,813 to 297,241
_0279
Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150
_0280
Position (kb) 295
296
297 Strain fitness (log2 ratio) -2
-1
0
1 at 294.722 kb on + strand, within Shew_0277 at 294.932 kb on - strand, within Shew_0277 at 294.953 kb on - strand, within Shew_0277 at 294.955 kb on - strand, within Shew_0277 at 294.964 kb on + strand, within Shew_0277 at 295.250 kb on - strand, within Shew_0277 at 295.315 kb on - strand at 295.331 kb on + strand at 295.337 kb on - strand at 295.339 kb on - strand at 295.414 kb on - strand at 295.520 kb on - strand at 295.520 kb on - strand at 295.520 kb on - strand at 295.633 kb on - strand at 295.728 kb on + strand at 295.779 kb on + strand at 295.872 kb on - strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 295.926 kb on + strand, within Shew_0278 at 296.070 kb on + strand, within Shew_0278 at 296.140 kb on - strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.498 kb on + strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.506 kb on - strand, within Shew_0278 at 296.613 kb on - strand, within Shew_0278 at 296.908 kb on - strand, within Shew_0279 at 297.082 kb on + strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.090 kb on - strand, within Shew_0279 at 297.151 kb on - strand, within Shew_0279 at 297.157 kb on - strand, within Shew_0279 at 297.446 kb on + strand at 297.454 kb on - strand at 297.752 kb on - strand, within Shew_0280
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.005 mg/ml remove 294,722 + Shew_0277 0.15 +0.2 294,932 - Shew_0277 0.42 -0.0 294,953 - Shew_0277 0.44 -0.0 294,955 - Shew_0277 0.45 +0.6 294,964 + Shew_0277 0.46 -0.1 295,250 - Shew_0277 0.82 -0.4 295,315 - -0.3 295,331 + -0.4 295,337 - +0.2 295,339 - +0.3 295,414 - -0.0 295,520 - -0.3 295,520 - +0.4 295,520 - +0.0 295,633 - +1.0 295,728 + -0.3 295,779 + +0.4 295,872 - Shew_0278 0.18 -0.4 295,926 + Shew_0278 0.23 +0.1 295,926 + Shew_0278 0.23 +0.2 296,070 + Shew_0278 0.36 -0.9 296,140 - Shew_0278 0.42 -0.2 296,498 + Shew_0278 0.75 +0.2 296,498 + Shew_0278 0.75 -0.2 296,498 + Shew_0278 0.75 -0.6 296,498 + Shew_0278 0.75 +0.6 296,498 + Shew_0278 0.75 -0.5 296,506 - Shew_0278 0.76 -0.8 296,506 - Shew_0278 0.76 -0.0 296,506 - Shew_0278 0.76 -2.3 296,613 - Shew_0278 0.86 +0.7 296,908 - Shew_0279 0.22 +0.0 297,082 + Shew_0279 0.63 +0.3 297,090 - Shew_0279 0.65 +1.0 297,090 - Shew_0279 0.65 -0.4 297,151 - Shew_0279 0.79 +0.1 297,157 - Shew_0279 0.80 +0.7 297,446 + -0.8 297,454 - -0.3 297,752 - Shew_0280 0.43 -1.8
Or see this region's nucleotide sequence