Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4158

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4157 and Dshi_4158 are separated by 78 nucleotidesDshi_4158 and Dshi_4159 are separated by 121 nucleotides Dshi_4157: Dshi_4157 - monooxygenase protein, putative (RefSeq), at 3,833 to 5,632 _4157 Dshi_4158: Dshi_4158 - acetoin reductase (RefSeq), at 5,711 to 6,484 _4158 Dshi_4159: Dshi_4159 - Alcohol dehydrogenase GroES domain protein (RefSeq), at 6,606 to 7,658 _4159 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1at 4.754 kb on + strand, within Dshi_4157at 4.762 kb on - strand, within Dshi_4157at 4.765 kb on + strand, within Dshi_4157at 4.783 kb on - strand, within Dshi_4157at 4.884 kb on - strand, within Dshi_4157at 4.952 kb on + strandat 4.974 kb on + strand, within Dshi_4157at 5.157 kb on + strand, within Dshi_4157at 5.165 kb on - strand, within Dshi_4157at 5.253 kb on + strand, within Dshi_4157at 5.386 kb on + strand, within Dshi_4157at 5.410 kb on + strand, within Dshi_4157at 5.433 kb on + strand, within Dshi_4157at 5.722 kb on + strandat 5.722 kb on + strandat 5.730 kb on - strandat 5.934 kb on + strand, within Dshi_4158at 6.023 kb on + strand, within Dshi_4158at 6.064 kb on - strand, within Dshi_4158at 6.330 kb on - strand, within Dshi_4158at 6.571 kb on - strandat 6.586 kb on + strandat 6.689 kb on + strandat 7.129 kb on + strand, within Dshi_4159at 7.147 kb on - strand, within Dshi_4159

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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4,754 + Dshi_4157 0.51 -1.0
4,762 - Dshi_4157 0.52 -1.9
4,765 + Dshi_4157 0.52 -0.6
4,783 - Dshi_4157 0.53 -0.3
4,884 - Dshi_4157 0.58 +1.0
4,952 + -1.9
4,974 + Dshi_4157 0.63 +1.3
5,157 + Dshi_4157 0.74 +1.0
5,165 - Dshi_4157 0.74 -1.2
5,253 + Dshi_4157 0.79 -1.9
5,386 + Dshi_4157 0.86 -1.8
5,410 + Dshi_4157 0.88 +1.1
5,433 + Dshi_4157 0.89 -0.3
5,722 + +0.4
5,722 + -2.1
5,730 - -2.7
5,934 + Dshi_4158 0.29 +0.8
6,023 + Dshi_4158 0.40 -1.9
6,064 - Dshi_4158 0.46 +0.2
6,330 - Dshi_4158 0.80 -1.0
6,571 - +0.0
6,586 + -1.6
6,689 + -0.9
7,129 + Dshi_4159 0.50 +0.4
7,147 - Dshi_4159 0.51 +0.4

Or see this region's nucleotide sequence