Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3997 and Dshi_3998 overlap by 4 nucleotides Dshi_3998 and Dshi_3999 are separated by 80 nucleotides Dshi_3999 and Dshi_4000 are separated by 124 nucleotides
Dshi_3997: Dshi_3997 - hypothetical protein (RefSeq), at 58,778 to 60,277
_3997
Dshi_3998: Dshi_3998 - DNA polymerase III, alpha subunit (RefSeq), at 60,274 to 63,624
_3998
Dshi_3999: Dshi_3999 - ParB-like nuclease (RefSeq), at 63,705 to 64,433
_3999
Dshi_4000: Dshi_4000 - hypothetical protein (RefSeq), at 64,558 to 64,860
_4000
Position (kb) 60
61
62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.458 kb on - strand, within Dshi_3997 at 59.460 kb on + strand, within Dshi_3997 at 59.502 kb on + strand, within Dshi_3997 at 59.571 kb on - strand, within Dshi_3997 at 59.655 kb on - strand, within Dshi_3997 at 60.219 kb on - strand at 60.247 kb on + strand at 60.485 kb on + strand at 60.505 kb on - strand at 60.614 kb on - strand, within Dshi_3998 at 60.683 kb on + strand, within Dshi_3998 at 60.696 kb on - strand, within Dshi_3998 at 60.707 kb on - strand, within Dshi_3998 at 60.946 kb on + strand, within Dshi_3998 at 61.001 kb on + strand, within Dshi_3998 at 61.024 kb on + strand, within Dshi_3998 at 61.028 kb on + strand, within Dshi_3998 at 61.276 kb on + strand, within Dshi_3998 at 61.410 kb on + strand, within Dshi_3998 at 61.471 kb on - strand, within Dshi_3998 at 61.488 kb on + strand, within Dshi_3998 at 61.546 kb on - strand, within Dshi_3998 at 61.699 kb on + strand, within Dshi_3998 at 61.914 kb on + strand, within Dshi_3998 at 61.922 kb on - strand, within Dshi_3998 at 61.985 kb on + strand, within Dshi_3998 at 62.116 kb on + strand, within Dshi_3998 at 62.127 kb on + strand, within Dshi_3998 at 62.161 kb on + strand, within Dshi_3998 at 62.352 kb on + strand, within Dshi_3998 at 62.362 kb on - strand, within Dshi_3998 at 62.676 kb on + strand, within Dshi_3998 at 62.697 kb on - strand, within Dshi_3998 at 62.776 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on + strand, within Dshi_3998 at 62.789 kb on - strand, within Dshi_3998 at 62.797 kb on - strand, within Dshi_3998 at 62.797 kb on - strand, within Dshi_3998 at 62.901 kb on + strand, within Dshi_3998 at 63.193 kb on - strand, within Dshi_3998 at 63.276 kb on + strand, within Dshi_3998 at 63.343 kb on + strand at 63.396 kb on + strand at 63.534 kb on + strand at 63.565 kb on + strand at 63.581 kb on - strand at 63.788 kb on - strand, within Dshi_3999 at 63.797 kb on + strand, within Dshi_3999 at 63.800 kb on - strand, within Dshi_3999 at 63.805 kb on - strand, within Dshi_3999 at 63.840 kb on - strand, within Dshi_3999 at 63.921 kb on + strand, within Dshi_3999 at 64.131 kb on + strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.139 kb on - strand, within Dshi_3999 at 64.158 kb on - strand, within Dshi_3999 at 64.173 kb on - strand, within Dshi_3999 at 64.192 kb on + strand, within Dshi_3999 at 64.235 kb on - strand, within Dshi_3999 at 64.252 kb on + strand, within Dshi_3999 at 64.276 kb on + strand, within Dshi_3999 at 64.341 kb on - strand, within Dshi_3999 at 64.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 59,458 - Dshi_3997 0.45 -0.8 59,460 + Dshi_3997 0.45 +2.5 59,502 + Dshi_3997 0.48 -0.4 59,571 - Dshi_3997 0.53 -1.0 59,655 - Dshi_3997 0.58 -1.1 60,219 - -1.1 60,247 + -1.7 60,485 + -1.8 60,505 - -3.0 60,614 - Dshi_3998 0.10 +0.7 60,683 + Dshi_3998 0.12 -0.6 60,696 - Dshi_3998 0.13 -1.1 60,707 - Dshi_3998 0.13 -1.1 60,946 + Dshi_3998 0.20 -0.2 61,001 + Dshi_3998 0.22 -0.4 61,024 + Dshi_3998 0.22 -0.5 61,028 + Dshi_3998 0.23 -0.8 61,276 + Dshi_3998 0.30 -0.4 61,410 + Dshi_3998 0.34 +0.7 61,471 - Dshi_3998 0.36 -0.8 61,488 + Dshi_3998 0.36 +2.1 61,546 - Dshi_3998 0.38 -1.3 61,699 + Dshi_3998 0.43 -0.8 61,914 + Dshi_3998 0.49 -1.1 61,922 - Dshi_3998 0.49 -1.5 61,985 + Dshi_3998 0.51 -0.2 62,116 + Dshi_3998 0.55 -0.1 62,127 + Dshi_3998 0.55 -2.1 62,161 + Dshi_3998 0.56 +0.9 62,352 + Dshi_3998 0.62 -0.2 62,362 - Dshi_3998 0.62 +2.3 62,676 + Dshi_3998 0.72 -0.8 62,697 - Dshi_3998 0.72 -1.3 62,776 + Dshi_3998 0.75 +1.7 62,789 + Dshi_3998 0.75 -0.6 62,789 + Dshi_3998 0.75 -1.7 62,789 + Dshi_3998 0.75 -0.0 62,789 + Dshi_3998 0.75 -0.5 62,789 + Dshi_3998 0.75 +0.3 62,789 - Dshi_3998 0.75 -1.2 62,797 - Dshi_3998 0.75 -1.8 62,797 - Dshi_3998 0.75 -1.1 62,901 + Dshi_3998 0.78 -1.7 63,193 - Dshi_3998 0.87 -0.3 63,276 + Dshi_3998 0.90 -0.5 63,343 + -0.0 63,396 + -0.1 63,534 + -1.8 63,565 + +0.2 63,581 - -1.3 63,788 - Dshi_3999 0.11 -0.2 63,797 + Dshi_3999 0.13 -0.1 63,800 - Dshi_3999 0.13 -0.1 63,805 - Dshi_3999 0.14 -0.7 63,840 - Dshi_3999 0.19 +1.0 63,921 + Dshi_3999 0.30 -0.6 64,131 + Dshi_3999 0.58 +0.1 64,139 - Dshi_3999 0.60 -1.3 64,139 - Dshi_3999 0.60 -0.7 64,139 - Dshi_3999 0.60 +0.1 64,139 - Dshi_3999 0.60 -1.7 64,139 - Dshi_3999 0.60 -1.6 64,158 - Dshi_3999 0.62 +0.1 64,173 - Dshi_3999 0.64 -0.2 64,192 + Dshi_3999 0.67 +1.9 64,235 - Dshi_3999 0.73 +1.3 64,252 + Dshi_3999 0.75 -2.5 64,276 + Dshi_3999 0.78 -0.4 64,341 - Dshi_3999 0.87 -1.3 64,420 - -0.1
Or see this region's nucleotide sequence