Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3836

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3834 and Dshi_3835 overlap by 26 nucleotidesDshi_3835 and Dshi_3836 overlap by 4 nucleotidesDshi_3836 and Dshi_3837 are separated by 136 nucleotides Dshi_3834: Dshi_3834 - signal transduction histidine kinase (RefSeq), at 43,171 to 44,907 _3834 Dshi_3835: Dshi_3835 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 44,882 to 45,445 _3835 Dshi_3836: Dshi_3836 - hypothetical protein (RefSeq), at 45,442 to 45,621 _3836 Dshi_3837: Dshi_3837 - response regulator receiver and SARP domain protein (RefSeq), at 45,758 to 46,573 _3837 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 44.446 kb on - strand, within Dshi_3834at 44.480 kb on + strand, within Dshi_3834at 44.542 kb on + strand, within Dshi_3834at 44.551 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.715 kb on - strand, within Dshi_3834at 44.752 kb on + strandat 44.879 kb on + strandat 44.879 kb on + strandat 44.917 kb on + strandat 44.958 kb on + strand, within Dshi_3835at 44.985 kb on - strand, within Dshi_3835at 45.255 kb on + strand, within Dshi_3835at 45.258 kb on - strand, within Dshi_3835at 45.312 kb on + strand, within Dshi_3835at 45.320 kb on - strand, within Dshi_3835at 45.320 kb on - strand, within Dshi_3835at 45.321 kb on + strand, within Dshi_3835at 45.426 kb on + strandat 45.519 kb on - strand, within Dshi_3836at 45.534 kb on - strand, within Dshi_3836at 45.545 kb on - strand, within Dshi_3836at 45.623 kb on - strandat 45.623 kb on - strandat 45.624 kb on - strandat 45.664 kb on - strandat 45.759 kb on + strandat 45.771 kb on + strandat 45.801 kb on - strandat 45.857 kb on + strand, within Dshi_3837at 45.870 kb on - strand, within Dshi_3837at 45.935 kb on - strand, within Dshi_3837at 45.980 kb on - strand, within Dshi_3837at 46.026 kb on - strand, within Dshi_3837at 46.026 kb on - strand, within Dshi_3837at 46.033 kb on - strand, within Dshi_3837at 46.085 kb on + strand, within Dshi_3837at 46.093 kb on - strand, within Dshi_3837at 46.297 kb on - strand, within Dshi_3837at 46.374 kb on - strand, within Dshi_3837at 46.437 kb on - strand, within Dshi_3837at 46.466 kb on + strand, within Dshi_3837at 46.475 kb on - strand, within Dshi_3837at 46.476 kb on - strand, within Dshi_3837at 46.493 kb on + strandat 46.503 kb on - strandat 46.503 kb on - strandat 46.524 kb on - strandat 46.531 kb on - strandat 46.592 kb on - strandat 46.592 kb on - strandat 46.603 kb on - strandat 46.604 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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44,446 - Dshi_3834 0.73 -1.8
44,480 + Dshi_3834 0.75 -0.9
44,542 + Dshi_3834 0.79 -0.3
44,551 - Dshi_3834 0.79 -1.4
44,715 - Dshi_3834 0.89 -0.5
44,715 - Dshi_3834 0.89 +2.3
44,715 - Dshi_3834 0.89 -0.7
44,752 + -3.5
44,879 + -0.6
44,879 + +0.3
44,917 + +0.1
44,958 + Dshi_3835 0.13 -2.2
44,985 - Dshi_3835 0.18 -1.2
45,255 + Dshi_3835 0.66 -3.2
45,258 - Dshi_3835 0.67 +1.0
45,312 + Dshi_3835 0.76 -4.1
45,320 - Dshi_3835 0.78 -2.2
45,320 - Dshi_3835 0.78 -2.3
45,321 + Dshi_3835 0.78 +2.4
45,426 + -3.5
45,519 - Dshi_3836 0.43 -0.2
45,534 - Dshi_3836 0.51 -1.8
45,545 - Dshi_3836 0.57 +1.4
45,623 - +1.2
45,623 - -1.5
45,624 - -2.3
45,664 - -0.6
45,759 + -3.2
45,771 + +0.8
45,801 - -2.6
45,857 + Dshi_3837 0.12 -0.3
45,870 - Dshi_3837 0.14 +0.4
45,935 - Dshi_3837 0.22 +3.8
45,980 - Dshi_3837 0.27 -0.8
46,026 - Dshi_3837 0.33 +0.7
46,026 - Dshi_3837 0.33 -2.8
46,033 - Dshi_3837 0.34 +0.3
46,085 + Dshi_3837 0.40 -2.7
46,093 - Dshi_3837 0.41 +1.4
46,297 - Dshi_3837 0.66 +0.1
46,374 - Dshi_3837 0.75 -0.2
46,437 - Dshi_3837 0.83 -2.2
46,466 + Dshi_3837 0.87 -0.7
46,475 - Dshi_3837 0.88 +0.8
46,476 - Dshi_3837 0.88 -1.5
46,493 + -0.4
46,503 - -3.3
46,503 - -0.5
46,524 - -1.6
46,531 - -0.2
46,592 - -0.2
46,592 - +0.4
46,603 - -0.3
46,604 + -0.5

Or see this region's nucleotide sequence