Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3817

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3815 and Dshi_3816 are separated by 2 nucleotidesDshi_3816 and Dshi_3817 are separated by 125 nucleotidesDshi_3817 and Dshi_3818 are separated by 17 nucleotidesDshi_3818 and Dshi_3819 overlap by 4 nucleotides Dshi_3815: Dshi_3815 - monooxygenase FAD-binding (RefSeq), at 23,077 to 24,702 _3815 Dshi_3816: Dshi_3816 - hypothetical protein (RefSeq), at 24,705 to 24,890 _3816 Dshi_3817: Dshi_3817 - beta-ketoadipyl CoA thiolase (RefSeq), at 25,016 to 26,218 _3817 Dshi_3818: Dshi_3818 - phenylacetate-CoA oxygenase, PaaG subunit (RefSeq), at 26,236 to 27,213 _3818 Dshi_3819: Dshi_3819 - phenylacetate-CoA oxygenase, PaaH subunit (RefSeq), at 27,210 to 27,542 _3819 Position (kb) 25 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 24.135 kb on - strand, within Dshi_3815at 24.137 kb on - strand, within Dshi_3815at 24.139 kb on + strand, within Dshi_3815at 24.157 kb on - strand, within Dshi_3815at 24.165 kb on + strand, within Dshi_3815at 24.165 kb on + strand, within Dshi_3815at 24.173 kb on - strand, within Dshi_3815at 24.259 kb on + strand, within Dshi_3815at 24.267 kb on - strand, within Dshi_3815at 24.439 kb on - strand, within Dshi_3815at 24.632 kb on - strandat 24.721 kb on - strandat 24.721 kb on - strandat 25.144 kb on + strand, within Dshi_3817at 25.153 kb on - strand, within Dshi_3817at 25.313 kb on - strand, within Dshi_3817at 25.409 kb on + strand, within Dshi_3817at 25.410 kb on + strand, within Dshi_3817at 25.430 kb on + strand, within Dshi_3817at 25.695 kb on - strand, within Dshi_3817at 25.928 kb on + strand, within Dshi_3817at 25.978 kb on + strand, within Dshi_3817at 26.002 kb on - strand, within Dshi_3817at 26.019 kb on + strand, within Dshi_3817at 26.111 kb on + strandat 26.144 kb on + strandat 26.196 kb on - strandat 26.212 kb on + strandat 26.325 kb on - strandat 26.365 kb on + strand, within Dshi_3818at 26.532 kb on - strand, within Dshi_3818at 26.561 kb on + strand, within Dshi_3818at 26.611 kb on + strand, within Dshi_3818at 26.619 kb on - strand, within Dshi_3818at 26.649 kb on + strand, within Dshi_3818at 26.722 kb on + strand, within Dshi_3818at 26.770 kb on - strand, within Dshi_3818at 26.823 kb on - strand, within Dshi_3818at 26.874 kb on - strand, within Dshi_3818at 26.880 kb on - strand, within Dshi_3818at 26.956 kb on + strand, within Dshi_3818at 26.963 kb on + strand, within Dshi_3818at 26.997 kb on + strand, within Dshi_3818

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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24,135 - Dshi_3815 0.65 -2.2
24,137 - Dshi_3815 0.65 -2.2
24,139 + Dshi_3815 0.65 -1.6
24,157 - Dshi_3815 0.66 +1.8
24,165 + Dshi_3815 0.67 -0.2
24,165 + Dshi_3815 0.67 -0.2
24,173 - Dshi_3815 0.67 +1.8
24,259 + Dshi_3815 0.73 +2.8
24,267 - Dshi_3815 0.73 -0.8
24,439 - Dshi_3815 0.84 -0.3
24,632 - +0.2
24,721 - -1.8
24,721 - +1.8
25,144 + Dshi_3817 0.11 -1.8
25,153 - Dshi_3817 0.11 -2.0
25,313 - Dshi_3817 0.25 -0.2
25,409 + Dshi_3817 0.33 -3.9
25,410 + Dshi_3817 0.33 -1.8
25,430 + Dshi_3817 0.34 -0.2
25,695 - Dshi_3817 0.56 -0.6
25,928 + Dshi_3817 0.76 +0.2
25,978 + Dshi_3817 0.80 +0.8
26,002 - Dshi_3817 0.82 -2.2
26,019 + Dshi_3817 0.83 -2.7
26,111 + -0.5
26,144 + +0.7
26,196 - -2.6
26,212 + +0.4
26,325 - -0.2
26,365 + Dshi_3818 0.13 +2.2
26,532 - Dshi_3818 0.30 -1.2
26,561 + Dshi_3818 0.33 +0.7
26,611 + Dshi_3818 0.38 -2.5
26,619 - Dshi_3818 0.39 -0.7
26,649 + Dshi_3818 0.42 -0.8
26,722 + Dshi_3818 0.50 -1.5
26,770 - Dshi_3818 0.55 -0.2
26,823 - Dshi_3818 0.60 +0.2
26,874 - Dshi_3818 0.65 +0.6
26,880 - Dshi_3818 0.66 -0.8
26,956 + Dshi_3818 0.74 -1.4
26,963 + Dshi_3818 0.74 +1.2
26,997 + Dshi_3818 0.78 +0.1

Or see this region's nucleotide sequence