Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3794 and Dshi_3795 overlap by 4 nucleotides Dshi_3795 and Dshi_3796 overlap by 4 nucleotides Dshi_3796 and Dshi_3797 overlap by 4 nucleotides Dshi_3797 and Dshi_3798 overlap by 4 nucleotides
Dshi_3794: Dshi_3794 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,862 to 3,749
_3794
Dshi_3795: Dshi_3795 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 3,746 to 4,741
_3795
Dshi_3796: Dshi_3796 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 4,738 to 5,739
_3796
Dshi_3797: Dshi_3797 - Asp/Glu racemase (RefSeq), at 5,736 to 6,419
_3797
Dshi_3798: Dshi_3798 - NADH:ubiquinone oxidoreductase complex I intermediate-associated protein 30 (RefSeq), at 6,416 to 6,958
_3798
Position (kb) 4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3.781 kb on - strand at 3.790 kb on - strand at 3.801 kb on + strand at 3.919 kb on + strand, within Dshi_3795 at 3.919 kb on + strand, within Dshi_3795 at 4.123 kb on + strand, within Dshi_3795 at 4.136 kb on - strand, within Dshi_3795 at 4.173 kb on + strand, within Dshi_3795 at 4.320 kb on + strand, within Dshi_3795 at 4.356 kb on - strand, within Dshi_3795 at 4.371 kb on - strand, within Dshi_3795 at 4.445 kb on - strand, within Dshi_3795 at 4.482 kb on - strand, within Dshi_3795 at 4.504 kb on - strand, within Dshi_3795 at 4.597 kb on + strand, within Dshi_3795 at 4.742 kb on + strand at 4.744 kb on - strand at 4.774 kb on - strand at 4.792 kb on + strand at 4.977 kb on - strand, within Dshi_3796 at 5.060 kb on - strand, within Dshi_3796 at 5.110 kb on - strand, within Dshi_3796 at 5.247 kb on - strand, within Dshi_3796 at 5.252 kb on + strand, within Dshi_3796 at 5.302 kb on + strand, within Dshi_3796 at 5.307 kb on + strand, within Dshi_3796 at 5.413 kb on + strand, within Dshi_3796 at 5.458 kb on - strand, within Dshi_3796 at 5.607 kb on + strand, within Dshi_3796 at 5.769 kb on - strand at 5.772 kb on + strand at 5.803 kb on - strand at 5.853 kb on - strand at 5.921 kb on + strand, within Dshi_3797 at 5.931 kb on + strand, within Dshi_3797 at 5.939 kb on - strand, within Dshi_3797 at 5.944 kb on + strand, within Dshi_3797 at 5.968 kb on + strand, within Dshi_3797 at 6.091 kb on - strand, within Dshi_3797 at 6.269 kb on - strand, within Dshi_3797 at 6.458 kb on + strand at 6.560 kb on + strand, within Dshi_3798 at 6.680 kb on - strand, within Dshi_3798
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 3,781 - -2.2 3,790 - -0.7 3,801 + +1.8 3,919 + Dshi_3795 0.17 -2.2 3,919 + Dshi_3795 0.17 -3.6 4,123 + Dshi_3795 0.38 -3.6 4,136 - Dshi_3795 0.39 -1.2 4,173 + Dshi_3795 0.43 -0.6 4,320 + Dshi_3795 0.58 -0.8 4,356 - Dshi_3795 0.61 -0.1 4,371 - Dshi_3795 0.63 -0.9 4,445 - Dshi_3795 0.70 +1.8 4,482 - Dshi_3795 0.74 +0.9 4,504 - Dshi_3795 0.76 +0.2 4,597 + Dshi_3795 0.85 +1.7 4,742 + -1.2 4,744 - +3.8 4,774 - -0.2 4,792 + -0.5 4,977 - Dshi_3796 0.24 -1.1 5,060 - Dshi_3796 0.32 -1.1 5,110 - Dshi_3796 0.37 +1.1 5,247 - Dshi_3796 0.51 -1.9 5,252 + Dshi_3796 0.51 +0.8 5,302 + Dshi_3796 0.56 -0.2 5,307 + Dshi_3796 0.57 -2.8 5,413 + Dshi_3796 0.67 -2.4 5,458 - Dshi_3796 0.72 -0.8 5,607 + Dshi_3796 0.87 -2.2 5,769 - +2.3 5,772 + -3.2 5,803 - -0.2 5,853 - -1.2 5,921 + Dshi_3797 0.27 -2.6 5,931 + Dshi_3797 0.29 +0.2 5,939 - Dshi_3797 0.30 +1.6 5,944 + Dshi_3797 0.30 -2.5 5,968 + Dshi_3797 0.34 +0.4 6,091 - Dshi_3797 0.52 +0.4 6,269 - Dshi_3797 0.78 -4.1 6,458 + -3.6 6,560 + Dshi_3798 0.27 +1.2 6,680 - Dshi_3798 0.49 +0.8
Or see this region's nucleotide sequence