Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3747

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3745 and Dshi_3746 are separated by 239 nucleotidesDshi_3746 and Dshi_3747 are separated by 306 nucleotidesDshi_3747 and Dshi_3748 are separated by 119 nucleotides Dshi_3745: Dshi_3745 - RC102 (RefSeq), at 151,632 to 152,987 _3745 Dshi_3746: Dshi_3746 - hypothetical protein (RefSeq), at 153,227 to 153,460 _3746 Dshi_3747: Dshi_3747 - hypothetical protein (RefSeq), at 153,767 to 154,930 _3747 Dshi_3748: Dshi_3748 - Resolvase domain (RefSeq), at 155,050 to 155,931 _3748 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 153.218 kb on + strandat 153.298 kb on + strand, within Dshi_3746at 153.409 kb on - strand, within Dshi_3746at 153.443 kb on + strandat 153.516 kb on + strandat 153.538 kb on + strandat 153.611 kb on - strandat 153.738 kb on - strandat 153.772 kb on - strandat 153.772 kb on - strandat 153.774 kb on + strandat 153.881 kb on - strandat 153.881 kb on - strandat 153.927 kb on - strand, within Dshi_3747at 154.064 kb on - strand, within Dshi_3747at 154.091 kb on - strand, within Dshi_3747at 154.127 kb on - strand, within Dshi_3747at 154.164 kb on - strand, within Dshi_3747at 154.198 kb on + strand, within Dshi_3747at 154.223 kb on - strand, within Dshi_3747at 154.225 kb on + strand, within Dshi_3747at 154.251 kb on - strand, within Dshi_3747at 154.304 kb on + strand, within Dshi_3747at 154.328 kb on + strand, within Dshi_3747at 154.396 kb on - strand, within Dshi_3747at 154.433 kb on - strand, within Dshi_3747at 154.442 kb on - strand, within Dshi_3747at 154.486 kb on + strand, within Dshi_3747at 154.494 kb on + strand, within Dshi_3747at 154.509 kb on + strand, within Dshi_3747at 154.509 kb on + strand, within Dshi_3747at 154.517 kb on - strand, within Dshi_3747at 154.517 kb on - strand, within Dshi_3747at 154.517 kb on - strand, within Dshi_3747at 154.525 kb on + strand, within Dshi_3747at 154.525 kb on + strand, within Dshi_3747at 154.533 kb on - strand, within Dshi_3747at 154.555 kb on - strand, within Dshi_3747at 154.558 kb on - strand, within Dshi_3747at 154.595 kb on + strand, within Dshi_3747at 154.599 kb on - strand, within Dshi_3747at 154.613 kb on - strand, within Dshi_3747at 154.652 kb on - strand, within Dshi_3747at 154.674 kb on + strand, within Dshi_3747at 154.674 kb on + strand, within Dshi_3747at 154.682 kb on - strand, within Dshi_3747at 154.692 kb on - strand, within Dshi_3747at 154.702 kb on - strand, within Dshi_3747at 154.857 kb on + strandat 154.865 kb on - strandat 154.999 kb on + strandat 155.007 kb on - strandat 155.024 kb on + strandat 155.030 kb on + strandat 155.030 kb on + strandat 155.066 kb on - strandat 155.154 kb on - strand, within Dshi_3748at 155.171 kb on + strand, within Dshi_3748at 155.250 kb on + strand, within Dshi_3748at 155.259 kb on - strand, within Dshi_3748at 155.290 kb on + strand, within Dshi_3748at 155.290 kb on + strand, within Dshi_3748at 155.298 kb on - strand, within Dshi_3748at 155.362 kb on + strand, within Dshi_3748at 155.375 kb on - strand, within Dshi_3748at 155.411 kb on + strand, within Dshi_3748at 155.411 kb on + strand, within Dshi_3748at 155.411 kb on - strand, within Dshi_3748at 155.412 kb on - strand, within Dshi_3748at 155.419 kb on - strand, within Dshi_3748at 155.419 kb on - strand, within Dshi_3748at 155.442 kb on + strand, within Dshi_3748at 155.450 kb on - strand, within Dshi_3748at 155.450 kb on - strand, within Dshi_3748at 155.465 kb on + strand, within Dshi_3748at 155.466 kb on + strand, within Dshi_3748at 155.473 kb on - strand, within Dshi_3748at 155.505 kb on + strand, within Dshi_3748at 155.505 kb on + strand, within Dshi_3748at 155.513 kb on - strand, within Dshi_3748at 155.513 kb on - strand, within Dshi_3748at 155.545 kb on + strand, within Dshi_3748at 155.550 kb on + strand, within Dshi_3748at 155.553 kb on - strand, within Dshi_3748at 155.555 kb on + strand, within Dshi_3748at 155.558 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.563 kb on - strand, within Dshi_3748at 155.575 kb on - strand, within Dshi_3748at 155.595 kb on - strand, within Dshi_3748at 155.605 kb on - strand, within Dshi_3748at 155.639 kb on - strand, within Dshi_3748at 155.692 kb on - strand, within Dshi_3748at 155.692 kb on - strand, within Dshi_3748at 155.703 kb on + strand, within Dshi_3748at 155.711 kb on - strand, within Dshi_3748at 155.749 kb on - strand, within Dshi_3748at 155.759 kb on + strand, within Dshi_3748at 155.791 kb on + strand, within Dshi_3748at 155.791 kb on + strand, within Dshi_3748at 155.799 kb on - strand, within Dshi_3748at 155.799 kb on - strand, within Dshi_3748at 155.803 kb on - strand, within Dshi_3748at 155.803 kb on - strand, within Dshi_3748at 155.837 kb on - strand, within Dshi_3748at 155.841 kb on + strand, within Dshi_3748at 155.847 kb on - strandat 155.850 kb on + strandat 155.878 kb on + strandat 155.878 kb on + strandat 155.878 kb on + strandat 155.883 kb on + strandat 155.886 kb on - strandat 155.886 kb on - strandat 155.892 kb on + strandat 155.895 kb on - strandat 155.917 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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153,218 + -2.5
153,298 + Dshi_3746 0.30 -0.5
153,409 - Dshi_3746 0.78 -1.3
153,443 + -0.3
153,516 + -2.1
153,538 + +3.6
153,611 - -1.3
153,738 - -0.5
153,772 - +0.5
153,772 - -0.2
153,774 + -0.2
153,881 - +0.8
153,881 - +0.2
153,927 - Dshi_3747 0.14 -1.4
154,064 - Dshi_3747 0.26 -1.9
154,091 - Dshi_3747 0.28 -1.0
154,127 - Dshi_3747 0.31 +0.6
154,164 - Dshi_3747 0.34 -0.5
154,198 + Dshi_3747 0.37 +0.6
154,223 - Dshi_3747 0.39 -1.2
154,225 + Dshi_3747 0.39 +0.0
154,251 - Dshi_3747 0.42 -0.1
154,304 + Dshi_3747 0.46 -1.5
154,328 + Dshi_3747 0.48 -0.5
154,396 - Dshi_3747 0.54 -0.3
154,433 - Dshi_3747 0.57 -0.8
154,442 - Dshi_3747 0.58 -0.2
154,486 + Dshi_3747 0.62 -0.7
154,494 + Dshi_3747 0.62 -2.8
154,509 + Dshi_3747 0.64 -2.0
154,509 + Dshi_3747 0.64 +0.9
154,517 - Dshi_3747 0.64 +1.1
154,517 - Dshi_3747 0.64 -0.6
154,517 - Dshi_3747 0.64 -2.3
154,525 + Dshi_3747 0.65 +1.5
154,525 + Dshi_3747 0.65 -2.4
154,533 - Dshi_3747 0.66 -2.1
154,555 - Dshi_3747 0.68 -2.1
154,558 - Dshi_3747 0.68 -0.2
154,595 + Dshi_3747 0.71 +0.0
154,599 - Dshi_3747 0.71 -0.7
154,613 - Dshi_3747 0.73 -1.3
154,652 - Dshi_3747 0.76 +0.8
154,674 + Dshi_3747 0.78 -0.1
154,674 + Dshi_3747 0.78 -0.0
154,682 - Dshi_3747 0.79 -0.3
154,692 - Dshi_3747 0.79 -0.8
154,702 - Dshi_3747 0.80 +0.7
154,857 + -1.6
154,865 - -0.1
154,999 + -0.4
155,007 - -1.7
155,024 + +2.1
155,030 + +1.1
155,030 + -1.3
155,066 - +0.9
155,154 - Dshi_3748 0.12 -0.0
155,171 + Dshi_3748 0.14 +0.9
155,250 + Dshi_3748 0.23 +0.1
155,259 - Dshi_3748 0.24 +2.1
155,290 + Dshi_3748 0.27 -1.3
155,290 + Dshi_3748 0.27 +0.7
155,298 - Dshi_3748 0.28 +0.5
155,362 + Dshi_3748 0.35 -0.9
155,375 - Dshi_3748 0.37 +0.2
155,411 + Dshi_3748 0.41 -1.0
155,411 + Dshi_3748 0.41 -0.2
155,411 - Dshi_3748 0.41 +1.3
155,412 - Dshi_3748 0.41 -1.4
155,419 - Dshi_3748 0.42 -0.7
155,419 - Dshi_3748 0.42 -1.5
155,442 + Dshi_3748 0.44 -0.1
155,450 - Dshi_3748 0.45 -0.5
155,450 - Dshi_3748 0.45 -2.0
155,465 + Dshi_3748 0.47 -0.0
155,466 + Dshi_3748 0.47 -0.5
155,473 - Dshi_3748 0.48 -0.4
155,505 + Dshi_3748 0.52 -0.9
155,505 + Dshi_3748 0.52 -0.8
155,513 - Dshi_3748 0.52 -1.0
155,513 - Dshi_3748 0.52 -0.9
155,545 + Dshi_3748 0.56 -0.3
155,550 + Dshi_3748 0.57 -1.3
155,553 - Dshi_3748 0.57 -0.3
155,555 + Dshi_3748 0.57 -1.1
155,558 - Dshi_3748 0.58 -1.0
155,563 - Dshi_3748 0.58 +0.5
155,563 - Dshi_3748 0.58 -0.3
155,563 - Dshi_3748 0.58 -2.1
155,563 - Dshi_3748 0.58 -2.7
155,563 - Dshi_3748 0.58 -1.4
155,563 - Dshi_3748 0.58 -2.2
155,575 - Dshi_3748 0.60 -0.6
155,595 - Dshi_3748 0.62 +1.2
155,605 - Dshi_3748 0.63 -1.2
155,639 - Dshi_3748 0.67 +1.6
155,692 - Dshi_3748 0.73 +1.6
155,692 - Dshi_3748 0.73 +0.6
155,703 + Dshi_3748 0.74 -1.7
155,711 - Dshi_3748 0.75 +0.3
155,749 - Dshi_3748 0.79 +0.7
155,759 + Dshi_3748 0.80 +0.9
155,791 + Dshi_3748 0.84 +0.3
155,791 + Dshi_3748 0.84 -0.3
155,799 - Dshi_3748 0.85 +0.1
155,799 - Dshi_3748 0.85 -0.9
155,803 - Dshi_3748 0.85 +1.6
155,803 - Dshi_3748 0.85 -1.2
155,837 - Dshi_3748 0.89 +2.3
155,841 + Dshi_3748 0.90 -1.9
155,847 - +0.5
155,850 + -0.9
155,878 + -1.3
155,878 + -0.2
155,878 + -0.9
155,883 + -2.2
155,886 - -0.7
155,886 - -0.9
155,892 + -0.3
155,895 - +0.0
155,917 + -2.7

Or see this region's nucleotide sequence