Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3585

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3584 and Dshi_3585 are separated by 8 nucleotidesDshi_3585 and Dshi_3586 overlap by 4 nucleotidesDshi_3586 and Dshi_3587 are separated by 13 nucleotides Dshi_3584: Dshi_3584 - RNA polymerase, sigma 54 subunit, RpoN (RefSeq), at 3,774,813 to 3,776,129 _3584 Dshi_3585: Dshi_3585 - ABC transporter related (RefSeq), at 3,776,138 to 3,776,902 _3585 Dshi_3586: Dshi_3586 - Cell envelope biogenesis YhbN (RefSeq), at 3,776,899 to 3,777,411 _3586 Dshi_3587: Dshi_3587 - hypothetical protein (RefSeq), at 3,777,425 to 3,778,027 _3587 Position (kb) 3776 3777Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3775.138 kb on + strand, within Dshi_3584at 3775.181 kb on - strand, within Dshi_3584at 3775.196 kb on - strand, within Dshi_3584at 3775.296 kb on + strand, within Dshi_3584at 3775.334 kb on - strand, within Dshi_3584at 3775.512 kb on - strand, within Dshi_3584at 3775.610 kb on + strand, within Dshi_3584at 3775.618 kb on - strand, within Dshi_3584at 3775.664 kb on + strand, within Dshi_3584at 3775.707 kb on - strand, within Dshi_3584at 3775.731 kb on + strand, within Dshi_3584at 3775.834 kb on - strand, within Dshi_3584at 3775.866 kb on - strand, within Dshi_3584at 3775.905 kb on - strand, within Dshi_3584at 3775.915 kb on - strand, within Dshi_3584at 3775.923 kb on - strand, within Dshi_3584at 3775.940 kb on - strand, within Dshi_3584at 3776.136 kb on + strandat 3776.916 kb on + strandat 3777.435 kb on + strandat 3777.443 kb on - strandat 3777.464 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,775,138 + Dshi_3584 0.25 +1.8
3,775,181 - Dshi_3584 0.28 -0.3
3,775,196 - Dshi_3584 0.29 -2.6
3,775,296 + Dshi_3584 0.37 +0.4
3,775,334 - Dshi_3584 0.40 -0.6
3,775,512 - Dshi_3584 0.53 -0.8
3,775,610 + Dshi_3584 0.61 +0.0
3,775,618 - Dshi_3584 0.61 -4.0
3,775,664 + Dshi_3584 0.65 -1.8
3,775,707 - Dshi_3584 0.68 -1.6
3,775,731 + Dshi_3584 0.70 +0.0
3,775,834 - Dshi_3584 0.78 -0.8
3,775,866 - Dshi_3584 0.80 -1.5
3,775,905 - Dshi_3584 0.83 +0.8
3,775,915 - Dshi_3584 0.84 +2.4
3,775,923 - Dshi_3584 0.84 +1.0
3,775,940 - Dshi_3584 0.86 +0.4
3,776,136 + -0.4
3,776,916 + -3.0
3,777,435 + +1.3
3,777,443 - +2.4
3,777,464 - -0.7

Or see this region's nucleotide sequence