Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3571

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3570 and Dshi_3571 are separated by 75 nucleotidesDshi_3571 and Dshi_3572 are separated by 165 nucleotidesDshi_3572 and Dshi_3573 are separated by 30 nucleotides Dshi_3570: Dshi_3570 - chaperone protein DnaJ (RefSeq), at 3,759,367 to 3,760,518 _3570 Dshi_3571: Dshi_3571 - chaperone protein DnaK (RefSeq), at 3,760,594 to 3,762,513 _3571 Dshi_3572: Dshi_3572 - 2OG-Fe(II) oxygenase (RefSeq), at 3,762,679 to 3,763,314 _3572 Dshi_3573: Dshi_3573 - ABC-2 type transporter (RefSeq), at 3,763,345 to 3,764,166 _3573 Position (kb) 3760 3761 3762 3763Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3762.653 kb on + strandat 3762.669 kb on - strandat 3762.671 kb on + strandat 3762.671 kb on + strandat 3762.759 kb on - strand, within Dshi_3572at 3762.760 kb on - strand, within Dshi_3572at 3762.784 kb on + strand, within Dshi_3572at 3762.791 kb on - strand, within Dshi_3572at 3762.798 kb on - strand, within Dshi_3572at 3762.849 kb on + strand, within Dshi_3572at 3762.863 kb on + strand, within Dshi_3572at 3762.907 kb on + strand, within Dshi_3572at 3762.915 kb on - strand, within Dshi_3572at 3762.915 kb on - strand, within Dshi_3572at 3762.915 kb on - strand, within Dshi_3572at 3762.927 kb on - strand, within Dshi_3572at 3762.986 kb on + strand, within Dshi_3572at 3762.998 kb on - strand, within Dshi_3572at 3763.007 kb on + strand, within Dshi_3572at 3763.044 kb on + strand, within Dshi_3572at 3763.054 kb on + strand, within Dshi_3572at 3763.054 kb on + strand, within Dshi_3572at 3763.062 kb on - strand, within Dshi_3572at 3763.062 kb on - strand, within Dshi_3572at 3763.068 kb on - strand, within Dshi_3572at 3763.082 kb on + strand, within Dshi_3572at 3763.128 kb on + strand, within Dshi_3572at 3763.138 kb on + strand, within Dshi_3572at 3763.178 kb on - strand, within Dshi_3572at 3763.242 kb on + strand, within Dshi_3572at 3763.256 kb on + strandat 3763.284 kb on - strandat 3763.318 kb on - strandat 3763.318 kb on - strandat 3763.331 kb on + strandat 3763.339 kb on - strandat 3763.339 kb on - strandat 3763.358 kb on + strandat 3763.444 kb on + strand, within Dshi_3573at 3763.444 kb on + strand, within Dshi_3573at 3763.492 kb on + strand, within Dshi_3573at 3763.505 kb on + strand, within Dshi_3573

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,762,653 + -0.6
3,762,669 - +0.1
3,762,671 + +0.0
3,762,671 + +0.4
3,762,759 - Dshi_3572 0.13 -0.1
3,762,760 - Dshi_3572 0.13 +1.2
3,762,784 + Dshi_3572 0.17 -1.9
3,762,791 - Dshi_3572 0.18 -3.4
3,762,798 - Dshi_3572 0.19 -1.4
3,762,849 + Dshi_3572 0.27 +2.0
3,762,863 + Dshi_3572 0.29 +1.0
3,762,907 + Dshi_3572 0.36 +0.0
3,762,915 - Dshi_3572 0.37 +2.0
3,762,915 - Dshi_3572 0.37 -1.0
3,762,915 - Dshi_3572 0.37 -1.5
3,762,927 - Dshi_3572 0.39 -1.5
3,762,986 + Dshi_3572 0.48 -2.0
3,762,998 - Dshi_3572 0.50 -0.9
3,763,007 + Dshi_3572 0.52 -3.4
3,763,044 + Dshi_3572 0.57 +2.4
3,763,054 + Dshi_3572 0.59 +2.5
3,763,054 + Dshi_3572 0.59 -0.6
3,763,062 - Dshi_3572 0.60 +1.4
3,763,062 - Dshi_3572 0.60 +0.9
3,763,068 - Dshi_3572 0.61 -1.3
3,763,082 + Dshi_3572 0.63 -0.4
3,763,128 + Dshi_3572 0.71 +0.5
3,763,138 + Dshi_3572 0.72 +0.4
3,763,178 - Dshi_3572 0.78 -3.6
3,763,242 + Dshi_3572 0.89 +1.6
3,763,256 + +0.0
3,763,284 - -1.5
3,763,318 - -0.1
3,763,318 - -2.9
3,763,331 + +1.8
3,763,339 - +2.4
3,763,339 - -1.0
3,763,358 + -1.4
3,763,444 + Dshi_3573 0.12 +0.0
3,763,444 + Dshi_3573 0.12 -1.7
3,763,492 + Dshi_3573 0.18 +0.0
3,763,505 + Dshi_3573 0.19 +0.7

Or see this region's nucleotide sequence