Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3303

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3301 and Dshi_3302 are separated by 283 nucleotidesDshi_3302 and Dshi_3303 overlap by 4 nucleotidesDshi_3303 and Dshi_3304 are separated by 46 nucleotidesDshi_3304 and Dshi_3305 are separated by 3 nucleotides Dshi_3301: Dshi_3301 - branched-chain amino acid aminotransferase (RefSeq), at 3,465,947 to 3,466,816 _3301 Dshi_3302: Dshi_3302 - hypothetical protein (RefSeq), at 3,467,100 to 3,467,408 _3302 Dshi_3303: Dshi_3303 - hypothetical protein (RefSeq), at 3,467,405 to 3,468,508 _3303 Dshi_3304: Dshi_3304 - hypothetical protein (RefSeq), at 3,468,555 to 3,469,358 _3304 Dshi_3305: Dshi_3305 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,469,362 to 3,470,303 _3305 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3466.824 kb on + strandat 3466.904 kb on + strandat 3466.972 kb on + strandat 3467.133 kb on + strand, within Dshi_3302at 3467.141 kb on - strand, within Dshi_3302at 3467.167 kb on - strand, within Dshi_3302at 3467.486 kb on + strandat 3467.486 kb on + strandat 3467.565 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.597 kb on - strand, within Dshi_3303at 3467.629 kb on - strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.633 kb on + strand, within Dshi_3303at 3467.646 kb on - strand, within Dshi_3303at 3467.711 kb on + strand, within Dshi_3303at 3467.819 kb on - strand, within Dshi_3303at 3467.893 kb on + strand, within Dshi_3303at 3467.913 kb on + strand, within Dshi_3303at 3468.103 kb on - strand, within Dshi_3303at 3468.210 kb on - strand, within Dshi_3303at 3468.315 kb on + strand, within Dshi_3303at 3468.321 kb on + strandat 3468.473 kb on - strandat 3468.473 kb on - strandat 3468.473 kb on - strandat 3468.488 kb on - strandat 3468.636 kb on - strand, within Dshi_3304at 3468.645 kb on - strand, within Dshi_3304at 3468.692 kb on + strand, within Dshi_3304at 3468.745 kb on - strand, within Dshi_3304at 3468.825 kb on + strand, within Dshi_3304at 3468.943 kb on + strand, within Dshi_3304at 3468.983 kb on - strand, within Dshi_3304at 3469.081 kb on - strand, within Dshi_3304at 3469.081 kb on - strand, within Dshi_3304at 3469.091 kb on + strand, within Dshi_3304at 3469.216 kb on + strand, within Dshi_3304at 3469.288 kb on - strandat 3469.312 kb on + strandat 3469.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,466,824 + +0.1
3,466,904 + -0.7
3,466,972 + -1.7
3,467,133 + Dshi_3302 0.11 +2.1
3,467,141 - Dshi_3302 0.13 -0.2
3,467,167 - Dshi_3302 0.22 -1.9
3,467,486 + -1.2
3,467,486 + -1.5
3,467,565 - Dshi_3303 0.14 +2.4
3,467,597 - Dshi_3303 0.17 -2.9
3,467,597 - Dshi_3303 0.17 -0.9
3,467,629 - Dshi_3303 0.20 -1.5
3,467,633 + Dshi_3303 0.21 +2.1
3,467,633 + Dshi_3303 0.21 +0.1
3,467,646 - Dshi_3303 0.22 -0.3
3,467,711 + Dshi_3303 0.28 -0.9
3,467,819 - Dshi_3303 0.38 -0.7
3,467,893 + Dshi_3303 0.44 +0.1
3,467,913 + Dshi_3303 0.46 -1.2
3,468,103 - Dshi_3303 0.63 +0.1
3,468,210 - Dshi_3303 0.73 -2.5
3,468,315 + Dshi_3303 0.82 -1.9
3,468,321 + +0.1
3,468,473 - -2.2
3,468,473 - -1.5
3,468,473 - -2.5
3,468,488 - -1.6
3,468,636 - Dshi_3304 0.10 +0.7
3,468,645 - Dshi_3304 0.11 +1.1
3,468,692 + Dshi_3304 0.17 -0.5
3,468,745 - Dshi_3304 0.24 -1.9
3,468,825 + Dshi_3304 0.34 -0.1
3,468,943 + Dshi_3304 0.48 +0.1
3,468,983 - Dshi_3304 0.53 -1.9
3,469,081 - Dshi_3304 0.65 -1.5
3,469,081 - Dshi_3304 0.65 -0.9
3,469,091 + Dshi_3304 0.67 +0.1
3,469,216 + Dshi_3304 0.82 -0.3
3,469,288 - -3.6
3,469,312 + -1.4
3,469,423 - -1.1

Or see this region's nucleotide sequence