Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3301 and Dshi_3302 are separated by 283 nucleotides Dshi_3302 and Dshi_3303 overlap by 4 nucleotides Dshi_3303 and Dshi_3304 are separated by 46 nucleotides Dshi_3304 and Dshi_3305 are separated by 3 nucleotides
Dshi_3301: Dshi_3301 - branched-chain amino acid aminotransferase (RefSeq), at 3,465,947 to 3,466,816
_3301
Dshi_3302: Dshi_3302 - hypothetical protein (RefSeq), at 3,467,100 to 3,467,408
_3302
Dshi_3303: Dshi_3303 - hypothetical protein (RefSeq), at 3,467,405 to 3,468,508
_3303
Dshi_3304: Dshi_3304 - hypothetical protein (RefSeq), at 3,468,555 to 3,469,358
_3304
Dshi_3305: Dshi_3305 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,469,362 to 3,470,303
_3305
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3466.824 kb on + strand at 3466.904 kb on + strand at 3466.972 kb on + strand at 3467.133 kb on + strand, within Dshi_3302 at 3467.141 kb on - strand, within Dshi_3302 at 3467.167 kb on - strand, within Dshi_3302 at 3467.486 kb on + strand at 3467.486 kb on + strand at 3467.565 kb on - strand, within Dshi_3303 at 3467.597 kb on - strand, within Dshi_3303 at 3467.597 kb on - strand, within Dshi_3303 at 3467.629 kb on - strand, within Dshi_3303 at 3467.633 kb on + strand, within Dshi_3303 at 3467.633 kb on + strand, within Dshi_3303 at 3467.646 kb on - strand, within Dshi_3303 at 3467.711 kb on + strand, within Dshi_3303 at 3467.819 kb on - strand, within Dshi_3303 at 3467.893 kb on + strand, within Dshi_3303 at 3467.913 kb on + strand, within Dshi_3303 at 3468.103 kb on - strand, within Dshi_3303 at 3468.210 kb on - strand, within Dshi_3303 at 3468.315 kb on + strand, within Dshi_3303 at 3468.321 kb on + strand at 3468.473 kb on - strand at 3468.473 kb on - strand at 3468.473 kb on - strand at 3468.488 kb on - strand at 3468.636 kb on - strand, within Dshi_3304 at 3468.645 kb on - strand, within Dshi_3304 at 3468.692 kb on + strand, within Dshi_3304 at 3468.745 kb on - strand, within Dshi_3304 at 3468.825 kb on + strand, within Dshi_3304 at 3468.943 kb on + strand, within Dshi_3304 at 3468.983 kb on - strand, within Dshi_3304 at 3469.081 kb on - strand, within Dshi_3304 at 3469.081 kb on - strand, within Dshi_3304 at 3469.091 kb on + strand, within Dshi_3304 at 3469.216 kb on + strand, within Dshi_3304 at 3469.288 kb on - strand at 3469.312 kb on + strand at 3469.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 3,466,824 + +0.1 3,466,904 + -0.7 3,466,972 + -1.7 3,467,133 + Dshi_3302 0.11 +2.1 3,467,141 - Dshi_3302 0.13 -0.2 3,467,167 - Dshi_3302 0.22 -1.9 3,467,486 + -1.2 3,467,486 + -1.5 3,467,565 - Dshi_3303 0.14 +2.4 3,467,597 - Dshi_3303 0.17 -2.9 3,467,597 - Dshi_3303 0.17 -0.9 3,467,629 - Dshi_3303 0.20 -1.5 3,467,633 + Dshi_3303 0.21 +2.1 3,467,633 + Dshi_3303 0.21 +0.1 3,467,646 - Dshi_3303 0.22 -0.3 3,467,711 + Dshi_3303 0.28 -0.9 3,467,819 - Dshi_3303 0.38 -0.7 3,467,893 + Dshi_3303 0.44 +0.1 3,467,913 + Dshi_3303 0.46 -1.2 3,468,103 - Dshi_3303 0.63 +0.1 3,468,210 - Dshi_3303 0.73 -2.5 3,468,315 + Dshi_3303 0.82 -1.9 3,468,321 + +0.1 3,468,473 - -2.2 3,468,473 - -1.5 3,468,473 - -2.5 3,468,488 - -1.6 3,468,636 - Dshi_3304 0.10 +0.7 3,468,645 - Dshi_3304 0.11 +1.1 3,468,692 + Dshi_3304 0.17 -0.5 3,468,745 - Dshi_3304 0.24 -1.9 3,468,825 + Dshi_3304 0.34 -0.1 3,468,943 + Dshi_3304 0.48 +0.1 3,468,983 - Dshi_3304 0.53 -1.9 3,469,081 - Dshi_3304 0.65 -1.5 3,469,081 - Dshi_3304 0.65 -0.9 3,469,091 + Dshi_3304 0.67 +0.1 3,469,216 + Dshi_3304 0.82 -0.3 3,469,288 - -3.6 3,469,312 + -1.4 3,469,423 - -1.1
Or see this region's nucleotide sequence