Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3021 and Dshi_3022 are separated by 182 nucleotides Dshi_3022 and Dshi_3023 overlap by 4 nucleotides Dshi_3023 and Dshi_3024 are separated by 111 nucleotides
Dshi_3021: Dshi_3021 - aldehyde dehydrogenase (RefSeq), at 3,190,673 to 3,192,130
_3021
Dshi_3022: Dshi_3022 - PfkB domain protein (RefSeq), at 3,192,313 to 3,193,314
_3022
Dshi_3023: Dshi_3023 - endonuclease III (RefSeq), at 3,193,311 to 3,193,955
_3023
Dshi_3024: Dshi_3024 - transcriptional regulator, AraC family (RefSeq), at 3,194,067 to 3,194,930
_3024
Position (kb)
3192
3193
3194 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3191.398 kb on + strand, within Dshi_3021 at 3191.414 kb on + strand, within Dshi_3021 at 3191.539 kb on - strand, within Dshi_3021 at 3191.539 kb on - strand, within Dshi_3021 at 3191.596 kb on + strand, within Dshi_3021 at 3191.608 kb on + strand, within Dshi_3021 at 3191.623 kb on + strand, within Dshi_3021 at 3191.627 kb on - strand, within Dshi_3021 at 3191.639 kb on - strand, within Dshi_3021 at 3191.744 kb on + strand, within Dshi_3021 at 3191.893 kb on + strand, within Dshi_3021 at 3191.934 kb on - strand, within Dshi_3021 at 3191.989 kb on - strand at 3192.000 kb on + strand at 3192.008 kb on - strand at 3192.028 kb on + strand at 3192.061 kb on - strand at 3192.157 kb on - strand at 3192.269 kb on - strand at 3192.311 kb on + strand at 3192.392 kb on - strand at 3192.629 kb on + strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.642 kb on - strand, within Dshi_3022 at 3192.749 kb on - strand, within Dshi_3022 at 3192.788 kb on + strand, within Dshi_3022 at 3192.979 kb on - strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.133 kb on + strand, within Dshi_3022 at 3193.231 kb on + strand at 3193.295 kb on - strand at 3193.381 kb on + strand, within Dshi_3023 at 3193.571 kb on + strand, within Dshi_3023 at 3193.639 kb on + strand, within Dshi_3023 at 3193.698 kb on + strand, within Dshi_3023 at 3193.754 kb on - strand, within Dshi_3023 at 3193.808 kb on - strand, within Dshi_3023 at 3193.844 kb on + strand, within Dshi_3023 at 3193.872 kb on - strand, within Dshi_3023 at 3193.900 kb on + strand at 3193.971 kb on - strand at 3193.971 kb on - strand at 3194.015 kb on + strand at 3194.154 kb on + strand, within Dshi_3024 at 3194.160 kb on - strand, within Dshi_3024 at 3194.253 kb on - strand, within Dshi_3024 at 3194.308 kb on + strand, within Dshi_3024
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 3,191,398 + Dshi_3021 0.50 +2.6 3,191,414 + Dshi_3021 0.51 -2.9 3,191,539 - Dshi_3021 0.59 +0.6 3,191,539 - Dshi_3021 0.59 +1.1 3,191,596 + Dshi_3021 0.63 -1.3 3,191,608 + Dshi_3021 0.64 +0.3 3,191,623 + Dshi_3021 0.65 -0.7 3,191,627 - Dshi_3021 0.65 +1.0 3,191,639 - Dshi_3021 0.66 +2.3 3,191,744 + Dshi_3021 0.73 -3.9 3,191,893 + Dshi_3021 0.84 -3.7 3,191,934 - Dshi_3021 0.86 -0.4 3,191,989 - +1.3 3,192,000 + +0.7 3,192,008 - -2.3 3,192,028 + -1.5 3,192,061 - +0.8 3,192,157 - -2.0 3,192,269 - -3.0 3,192,311 + +0.4 3,192,392 - +0.1 3,192,629 + Dshi_3022 0.32 -3.0 3,192,642 - Dshi_3022 0.33 -0.9 3,192,642 - Dshi_3022 0.33 +0.7 3,192,642 - Dshi_3022 0.33 -0.9 3,192,749 - Dshi_3022 0.44 +2.9 3,192,788 + Dshi_3022 0.47 +0.9 3,192,979 - Dshi_3022 0.66 -1.9 3,193,133 + Dshi_3022 0.82 +0.2 3,193,133 + Dshi_3022 0.82 -2.7 3,193,231 + +0.7 3,193,295 - +1.2 3,193,381 + Dshi_3023 0.11 -2.3 3,193,571 + Dshi_3023 0.40 +2.1 3,193,639 + Dshi_3023 0.51 -3.3 3,193,698 + Dshi_3023 0.60 -0.4 3,193,754 - Dshi_3023 0.69 -1.5 3,193,808 - Dshi_3023 0.77 +0.9 3,193,844 + Dshi_3023 0.83 -1.0 3,193,872 - Dshi_3023 0.87 +0.1 3,193,900 + -1.1 3,193,971 - -3.2 3,193,971 - -0.0 3,194,015 + -0.3 3,194,154 + Dshi_3024 0.10 -0.3 3,194,160 - Dshi_3024 0.11 +1.9 3,194,253 - Dshi_3024 0.22 +0.3 3,194,308 + Dshi_3024 0.28 -2.7
Or see this region's nucleotide sequence