Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2930

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2928 and Dshi_2929 overlap by 34 nucleotidesDshi_2929 and Dshi_2930 overlap by 1 nucleotidesDshi_2930 and Dshi_2931 are separated by 134 nucleotides Dshi_2928: Dshi_2928 - protein of unknown function UPF0153 (RefSeq), at 3,086,472 to 3,086,963 _2928 Dshi_2929: Dshi_2929 - alpha/beta hydrolase fold (RefSeq), at 3,086,930 to 3,087,763 _2929 Dshi_2930: Dshi_2930 - DSBA oxidoreductase (RefSeq), at 3,087,763 to 3,088,362 _2930 Dshi_2931: Dshi_2931 - ribose-phosphate pyrophosphokinase (RefSeq), at 3,088,497 to 3,089,519 _2931 Position (kb) 3087 3088 3089Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3086.965 kb on - strandat 3087.011 kb on + strandat 3087.019 kb on - strand, within Dshi_2929at 3087.019 kb on - strand, within Dshi_2929at 3087.057 kb on - strand, within Dshi_2929at 3087.135 kb on - strand, within Dshi_2929at 3087.321 kb on - strand, within Dshi_2929at 3087.432 kb on - strand, within Dshi_2929at 3087.669 kb on + strand, within Dshi_2929at 3087.731 kb on + strandat 3087.786 kb on + strandat 3087.838 kb on - strand, within Dshi_2930at 3087.900 kb on + strand, within Dshi_2930at 3087.988 kb on - strand, within Dshi_2930at 3088.107 kb on + strand, within Dshi_2930at 3088.115 kb on - strand, within Dshi_2930at 3088.126 kb on - strand, within Dshi_2930at 3088.182 kb on - strand, within Dshi_2930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,086,965 - +2.3
3,087,011 + +0.3
3,087,019 - Dshi_2929 0.11 -0.0
3,087,019 - Dshi_2929 0.11 -1.0
3,087,057 - Dshi_2929 0.15 -0.6
3,087,135 - Dshi_2929 0.25 -0.4
3,087,321 - Dshi_2929 0.47 +1.3
3,087,432 - Dshi_2929 0.60 +1.9
3,087,669 + Dshi_2929 0.89 -4.2
3,087,731 + +1.3
3,087,786 + +1.6
3,087,838 - Dshi_2930 0.12 -1.7
3,087,900 + Dshi_2930 0.23 -1.8
3,087,988 - Dshi_2930 0.38 +0.3
3,088,107 + Dshi_2930 0.57 -0.0
3,088,115 - Dshi_2930 0.59 +1.3
3,088,126 - Dshi_2930 0.60 +0.6
3,088,182 - Dshi_2930 0.70 -2.9

Or see this region's nucleotide sequence