Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2913

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2911 and Dshi_2912 are separated by 24 nucleotidesDshi_2912 and Dshi_2913 are separated by 133 nucleotidesDshi_2913 and Dshi_2914 are separated by 54 nucleotidesDshi_2914 and Dshi_2915 are separated by 75 nucleotides Dshi_2911: Dshi_2911 - hypothetical protein (RefSeq), at 3,070,889 to 3,071,575 _2911 Dshi_2912: Dshi_2912 - hypothetical protein (RefSeq), at 3,071,600 to 3,071,788 _2912 Dshi_2913: Dshi_2913 - ABC transporter related (RefSeq), at 3,071,922 to 3,072,887 _2913 Dshi_2914: Dshi_2914 - lipase, putative (RefSeq), at 3,072,942 to 3,073,709 _2914 Dshi_2915: Dshi_2915 - NUDIX hydrolase (RefSeq), at 3,073,785 to 3,074,231 _2915 Position (kb) 3071 3072 3073Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3070.957 kb on + strandat 3070.960 kb on - strand, within Dshi_2911at 3070.975 kb on - strand, within Dshi_2911at 3071.015 kb on - strand, within Dshi_2911at 3071.079 kb on - strand, within Dshi_2911at 3071.087 kb on - strand, within Dshi_2911at 3071.155 kb on + strand, within Dshi_2911at 3071.179 kb on + strand, within Dshi_2911at 3071.366 kb on + strand, within Dshi_2911at 3071.408 kb on + strand, within Dshi_2911at 3071.573 kb on + strandat 3071.723 kb on + strand, within Dshi_2912at 3071.784 kb on + strandat 3071.840 kb on - strandat 3071.843 kb on + strandat 3071.847 kb on - strandat 3071.851 kb on - strandat 3071.851 kb on - strandat 3071.851 kb on - strandat 3071.929 kb on + strandat 3071.934 kb on + strandat 3072.035 kb on + strand, within Dshi_2913at 3072.149 kb on - strand, within Dshi_2913at 3072.426 kb on - strand, within Dshi_2913at 3072.429 kb on - strand, within Dshi_2913at 3072.568 kb on - strand, within Dshi_2913at 3072.616 kb on - strand, within Dshi_2913at 3072.634 kb on - strand, within Dshi_2913at 3072.858 kb on + strandat 3072.964 kb on + strandat 3073.091 kb on + strand, within Dshi_2914at 3073.143 kb on - strand, within Dshi_2914at 3073.150 kb on + strand, within Dshi_2914at 3073.158 kb on - strand, within Dshi_2914at 3073.269 kb on + strandat 3073.516 kb on + strand, within Dshi_2914at 3073.562 kb on + strand, within Dshi_2914at 3073.623 kb on - strand, within Dshi_2914at 3073.781 kb on + strandat 3073.802 kb on - strandat 3073.802 kb on - strandat 3073.843 kb on - strand, within Dshi_2915

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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3,070,957 + +1.1
3,070,960 - Dshi_2911 0.10 +0.2
3,070,975 - Dshi_2911 0.13 -0.4
3,071,015 - Dshi_2911 0.18 +0.9
3,071,079 - Dshi_2911 0.28 -3.9
3,071,087 - Dshi_2911 0.29 +1.3
3,071,155 + Dshi_2911 0.39 +0.3
3,071,179 + Dshi_2911 0.42 -2.8
3,071,366 + Dshi_2911 0.69 +0.3
3,071,408 + Dshi_2911 0.76 -2.0
3,071,573 + +0.3
3,071,723 + Dshi_2912 0.65 +2.9
3,071,784 + -1.7
3,071,840 - +0.3
3,071,843 + -2.5
3,071,847 - +1.0
3,071,851 - +1.3
3,071,851 - +0.3
3,071,851 - -2.9
3,071,929 + -2.8
3,071,934 + +2.3
3,072,035 + Dshi_2913 0.12 -0.6
3,072,149 - Dshi_2913 0.23 +2.9
3,072,426 - Dshi_2913 0.52 +0.7
3,072,429 - Dshi_2913 0.52 +0.2
3,072,568 - Dshi_2913 0.67 +0.3
3,072,616 - Dshi_2913 0.72 -0.1
3,072,634 - Dshi_2913 0.74 -0.7
3,072,858 + +0.3
3,072,964 + +0.3
3,073,091 + Dshi_2914 0.19 -0.5
3,073,143 - Dshi_2914 0.26 -1.9
3,073,150 + Dshi_2914 0.27 -0.1
3,073,158 - Dshi_2914 0.28 +0.3
3,073,269 + +0.3
3,073,516 + Dshi_2914 0.75 -0.9
3,073,562 + Dshi_2914 0.81 -0.7
3,073,623 - Dshi_2914 0.89 -0.4
3,073,781 + -2.3
3,073,802 - -0.7
3,073,802 - +1.9
3,073,843 - Dshi_2915 0.13 -1.6

Or see this region's nucleotide sequence