Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2769

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2767 and Dshi_2768 overlap by 4 nucleotidesDshi_2768 and Dshi_2769 are separated by 42 nucleotidesDshi_2769 and Dshi_2770 overlap by 4 nucleotides Dshi_2767: Dshi_2767 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,929,331 to 2,930,296 _2767 Dshi_2768: Dshi_2768 - hypothetical protein (RefSeq), at 2,930,293 to 2,931,126 _2768 Dshi_2769: Dshi_2769 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,931,169 to 2,931,762 _2769 Dshi_2770: Dshi_2770 - magnesium transporter (RefSeq), at 2,931,759 to 2,933,141 _2770 Position (kb) 2931 2932Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2930.437 kb on + strand, within Dshi_2768at 2930.687 kb on - strand, within Dshi_2768at 2930.696 kb on - strand, within Dshi_2768at 2930.792 kb on - strand, within Dshi_2768at 2930.824 kb on - strand, within Dshi_2768at 2930.831 kb on + strand, within Dshi_2768at 2931.117 kb on + strandat 2931.120 kb on - strandat 2931.125 kb on - strandat 2931.137 kb on - strandat 2931.143 kb on - strandat 2931.143 kb on - strandat 2931.143 kb on - strandat 2931.164 kb on - strandat 2931.174 kb on + strandat 2931.193 kb on - strandat 2931.262 kb on + strand, within Dshi_2769at 2931.270 kb on + strand, within Dshi_2769at 2931.275 kb on + strand, within Dshi_2769at 2931.280 kb on + strand, within Dshi_2769at 2931.311 kb on - strand, within Dshi_2769at 2931.384 kb on + strand, within Dshi_2769at 2931.704 kb on - strandat 2931.742 kb on + strandat 2932.732 kb on + strand, within Dshi_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,930,437 + Dshi_2768 0.17 -2.5
2,930,687 - Dshi_2768 0.47 +0.3
2,930,696 - Dshi_2768 0.48 -3.3
2,930,792 - Dshi_2768 0.60 -1.3
2,930,824 - Dshi_2768 0.64 -0.7
2,930,831 + Dshi_2768 0.65 +0.3
2,931,117 + -0.7
2,931,120 - +2.9
2,931,125 - +0.3
2,931,137 - +0.6
2,931,143 - -1.3
2,931,143 - -1.3
2,931,143 - -1.3
2,931,164 - +0.3
2,931,174 + -0.7
2,931,193 - -0.7
2,931,262 + Dshi_2769 0.16 +0.3
2,931,270 + Dshi_2769 0.17 -0.7
2,931,275 + Dshi_2769 0.18 +0.3
2,931,280 + Dshi_2769 0.19 +0.3
2,931,311 - Dshi_2769 0.24 +3.3
2,931,384 + Dshi_2769 0.36 -1.3
2,931,704 - -2.3
2,931,742 + -2.2
2,932,732 + Dshi_2770 0.70 -3.4

Or see this region's nucleotide sequence