Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2702

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2700 and Dshi_2701 overlap by 1 nucleotidesDshi_2701 and Dshi_2702 overlap by 4 nucleotidesDshi_2702 and Dshi_2703 are separated by 73 nucleotidesDshi_2703 and Dshi_2704 are separated by 160 nucleotides Dshi_2700: Dshi_2700 - haloacid dehalogenase, type II (RefSeq), at 2,860,992 to 2,861,681 _2700 Dshi_2701: Dshi_2701 - alpha/beta hydrolase fold (RefSeq), at 2,861,681 to 2,862,505 _2701 Dshi_2702: Dshi_2702 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 2,862,502 to 2,863,494 _2702 Dshi_2703: Dshi_2703 - hypothetical protein (RefSeq), at 2,863,568 to 2,863,975 _2703 Dshi_2704: Dshi_2704 - porphobilinogen deaminase (RefSeq), at 2,864,136 to 2,865,179 _2704 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2861.590 kb on + strand, within Dshi_2700at 2861.814 kb on + strand, within Dshi_2701at 2861.836 kb on + strand, within Dshi_2701at 2861.883 kb on - strand, within Dshi_2701at 2861.883 kb on - strand, within Dshi_2701at 2861.958 kb on - strand, within Dshi_2701at 2862.052 kb on + strand, within Dshi_2701at 2862.053 kb on - strand, within Dshi_2701at 2862.121 kb on + strand, within Dshi_2701at 2862.265 kb on + strand, within Dshi_2701at 2862.289 kb on + strand, within Dshi_2701at 2862.576 kb on + strandat 2862.580 kb on - strandat 2862.632 kb on - strand, within Dshi_2702at 2862.704 kb on - strand, within Dshi_2702at 2862.749 kb on + strand, within Dshi_2702at 2862.875 kb on - strand, within Dshi_2702at 2862.934 kb on - strand, within Dshi_2702at 2863.044 kb on - strand, within Dshi_2702at 2863.601 kb on + strandat 2863.611 kb on - strand, within Dshi_2703at 2863.746 kb on - strand, within Dshi_2703at 2863.910 kb on + strand, within Dshi_2703at 2863.968 kb on - strandat 2863.998 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,861,590 + Dshi_2700 0.87 -3.6
2,861,814 + Dshi_2701 0.16 +0.4
2,861,836 + Dshi_2701 0.19 -2.1
2,861,883 - Dshi_2701 0.24 -2.7
2,861,883 - Dshi_2701 0.24 -2.9
2,861,958 - Dshi_2701 0.34 -2.6
2,862,052 + Dshi_2701 0.45 +2.8
2,862,053 - Dshi_2701 0.45 -2.6
2,862,121 + Dshi_2701 0.53 +1.8
2,862,265 + Dshi_2701 0.71 -1.0
2,862,289 + Dshi_2701 0.74 -2.3
2,862,576 + -0.8
2,862,580 - -0.2
2,862,632 - Dshi_2702 0.13 -1.1
2,862,704 - Dshi_2702 0.20 +2.6
2,862,749 + Dshi_2702 0.25 -2.3
2,862,875 - Dshi_2702 0.38 +0.7
2,862,934 - Dshi_2702 0.44 -2.1
2,863,044 - Dshi_2702 0.55 -0.7
2,863,601 + +0.6
2,863,611 - Dshi_2703 0.11 +0.3
2,863,746 - Dshi_2703 0.44 +3.3
2,863,910 + Dshi_2703 0.84 -1.2
2,863,968 - -1.6
2,863,998 + +0.6

Or see this region's nucleotide sequence