Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2700 and Dshi_2701 overlap by 1 nucleotides Dshi_2701 and Dshi_2702 overlap by 4 nucleotides Dshi_2702 and Dshi_2703 are separated by 73 nucleotides Dshi_2703 and Dshi_2704 are separated by 160 nucleotides
Dshi_2700: Dshi_2700 - haloacid dehalogenase, type II (RefSeq), at 2,860,992 to 2,861,681
_2700
Dshi_2701: Dshi_2701 - alpha/beta hydrolase fold (RefSeq), at 2,861,681 to 2,862,505
_2701
Dshi_2702: Dshi_2702 - Pyridoxal-5'-phosphate-dependent protein beta subunit (RefSeq), at 2,862,502 to 2,863,494
_2702
Dshi_2703: Dshi_2703 - hypothetical protein (RefSeq), at 2,863,568 to 2,863,975
_2703
Dshi_2704: Dshi_2704 - porphobilinogen deaminase (RefSeq), at 2,864,136 to 2,865,179
_2704
Position (kb)
2862
2863
2864 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2861.590 kb on + strand, within Dshi_2700 at 2861.814 kb on + strand, within Dshi_2701 at 2861.836 kb on + strand, within Dshi_2701 at 2861.883 kb on - strand, within Dshi_2701 at 2861.883 kb on - strand, within Dshi_2701 at 2861.958 kb on - strand, within Dshi_2701 at 2862.052 kb on + strand, within Dshi_2701 at 2862.053 kb on - strand, within Dshi_2701 at 2862.121 kb on + strand, within Dshi_2701 at 2862.265 kb on + strand, within Dshi_2701 at 2862.289 kb on + strand, within Dshi_2701 at 2862.576 kb on + strand at 2862.580 kb on - strand at 2862.632 kb on - strand, within Dshi_2702 at 2862.704 kb on - strand, within Dshi_2702 at 2862.749 kb on + strand, within Dshi_2702 at 2862.875 kb on - strand, within Dshi_2702 at 2862.934 kb on - strand, within Dshi_2702 at 2863.044 kb on - strand, within Dshi_2702 at 2863.601 kb on + strand at 2863.611 kb on - strand, within Dshi_2703 at 2863.746 kb on - strand, within Dshi_2703 at 2863.910 kb on + strand, within Dshi_2703 at 2863.968 kb on - strand at 2863.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 2,861,590 + Dshi_2700 0.87 -3.6 2,861,814 + Dshi_2701 0.16 +0.4 2,861,836 + Dshi_2701 0.19 -2.1 2,861,883 - Dshi_2701 0.24 -2.7 2,861,883 - Dshi_2701 0.24 -2.9 2,861,958 - Dshi_2701 0.34 -2.6 2,862,052 + Dshi_2701 0.45 +2.8 2,862,053 - Dshi_2701 0.45 -2.6 2,862,121 + Dshi_2701 0.53 +1.8 2,862,265 + Dshi_2701 0.71 -1.0 2,862,289 + Dshi_2701 0.74 -2.3 2,862,576 + -0.8 2,862,580 - -0.2 2,862,632 - Dshi_2702 0.13 -1.1 2,862,704 - Dshi_2702 0.20 +2.6 2,862,749 + Dshi_2702 0.25 -2.3 2,862,875 - Dshi_2702 0.38 +0.7 2,862,934 - Dshi_2702 0.44 -2.1 2,863,044 - Dshi_2702 0.55 -0.7 2,863,601 + +0.6 2,863,611 - Dshi_2703 0.11 +0.3 2,863,746 - Dshi_2703 0.44 +3.3 2,863,910 + Dshi_2703 0.84 -1.2 2,863,968 - -1.6 2,863,998 + +0.6
Or see this region's nucleotide sequence