Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2139

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2138 and Dshi_2139 are separated by 73 nucleotidesDshi_2139 and Dshi_2140 are separated by 78 nucleotides Dshi_2138: Dshi_2138 - peptidase M23B (RefSeq), at 2,267,574 to 2,268,803 _2138 Dshi_2139: Dshi_2139 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,268,877 to 2,269,770 _2139 Dshi_2140: Dshi_2140 - sodium/hydrogen exchanger (RefSeq), at 2,269,849 to 2,271,162 _2140 Position (kb) 2268 2269 2270Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2268.878 kb on - strandat 2269.036 kb on - strand, within Dshi_2139at 2269.234 kb on - strand, within Dshi_2139at 2269.234 kb on - strand, within Dshi_2139at 2269.375 kb on - strand, within Dshi_2139at 2269.553 kb on + strand, within Dshi_2139at 2269.561 kb on - strand, within Dshi_2139at 2269.576 kb on + strand, within Dshi_2139at 2269.708 kb on - strandat 2269.846 kb on + strandat 2269.914 kb on + strandat 2270.007 kb on + strand, within Dshi_2140at 2270.120 kb on + strand, within Dshi_2140at 2270.138 kb on - strand, within Dshi_2140at 2270.154 kb on + strand, within Dshi_2140at 2270.173 kb on - strand, within Dshi_2140at 2270.181 kb on - strand, within Dshi_2140at 2270.213 kb on - strand, within Dshi_2140at 2270.390 kb on + strand, within Dshi_2140at 2270.494 kb on + strand, within Dshi_2140at 2270.494 kb on + strand, within Dshi_2140at 2270.502 kb on - strand, within Dshi_2140at 2270.510 kb on + strand, within Dshi_2140at 2270.561 kb on + strand, within Dshi_2140at 2270.582 kb on + strand, within Dshi_2140at 2270.638 kb on + strand, within Dshi_2140at 2270.646 kb on - strand, within Dshi_2140at 2270.678 kb on - strand, within Dshi_2140

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,268,878 - -0.5
2,269,036 - Dshi_2139 0.18 -0.6
2,269,234 - Dshi_2139 0.40 -1.6
2,269,234 - Dshi_2139 0.40 +1.0
2,269,375 - Dshi_2139 0.56 +3.1
2,269,553 + Dshi_2139 0.76 -0.4
2,269,561 - Dshi_2139 0.77 -0.0
2,269,576 + Dshi_2139 0.78 -0.7
2,269,708 - +2.0
2,269,846 + -1.7
2,269,914 + +1.5
2,270,007 + Dshi_2140 0.12 +1.0
2,270,120 + Dshi_2140 0.21 -1.0
2,270,138 - Dshi_2140 0.22 -2.6
2,270,154 + Dshi_2140 0.23 -1.6
2,270,173 - Dshi_2140 0.25 -1.7
2,270,181 - Dshi_2140 0.25 -0.0
2,270,213 - Dshi_2140 0.28 -0.9
2,270,390 + Dshi_2140 0.41 -1.0
2,270,494 + Dshi_2140 0.49 -1.3
2,270,494 + Dshi_2140 0.49 -0.0
2,270,502 - Dshi_2140 0.50 -0.3
2,270,510 + Dshi_2140 0.50 -1.4
2,270,561 + Dshi_2140 0.54 -0.6
2,270,582 + Dshi_2140 0.56 +0.4
2,270,638 + Dshi_2140 0.60 -0.0
2,270,646 - Dshi_2140 0.61 -1.3
2,270,678 - Dshi_2140 0.63 +0.7

Or see this region's nucleotide sequence