Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1994

Experiment: m.b. copper (II) chloride 0.64 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. copper (II) chloride 0.64 mM
2,110,305	+		Dshi_1993	0.27	-1.0
2,110,305	+		Dshi_1993	0.27	-1.0
2,110,440	-		Dshi_1993	0.38	+1.0
2,110,575	-		Dshi_1993	0.49	+0.0
2,110,576	+		Dshi_1993	0.49	-0.0
2,110,602	+				+1.0
2,110,874	-		Dshi_1993	0.73	+0.0
2,110,876	+		Dshi_1993	0.73	+1.1
2,110,883	+		Dshi_1993	0.74	+0.6
2,110,884	-		Dshi_1993	0.74	-0.8
2,110,884	-		Dshi_1993	0.74	-2.4
2,110,884	-		Dshi_1993	0.74	+1.0
2,110,884	-		Dshi_1993	0.74	+0.0
2,110,888	+		Dshi_1993	0.74	+0.7
2,110,911	+		Dshi_1993	0.76	-0.4
2,110,919	-		Dshi_1993	0.77	-3.0
2,111,082	+		Dshi_1993	0.90	+2.0
2,111,165	+				+0.0
2,111,235	+				+0.7
2,111,243	-				+1.0
2,111,261	+				+1.3
2,111,267	+				+1.6
2,111,267	+				+3.0
2,111,281	-				+0.4
2,111,284	+				-3.6
2,111,317	-				+0.0
2,111,423	-		Dshi_1994	0.16	-1.2
2,111,447	-		Dshi_1994	0.18	-3.7
2,111,470	+		Dshi_1994	0.20	-2.4
2,111,507	-		Dshi_1994	0.24	-1.0
2,111,579	+		Dshi_1994	0.30	-1.3
2,111,622	-		Dshi_1994	0.34	-0.7
2,111,624	-		Dshi_1994	0.34	+3.2
2,111,677	-		Dshi_1994	0.38	-3.2
2,111,705	-		Dshi_1994	0.41	+0.3
2,111,713	-		Dshi_1994	0.41	-2.8
2,111,715	+		Dshi_1994	0.42	-3.3
2,111,723	-		Dshi_1994	0.42	-3.0
2,111,763	+		Dshi_1994	0.46	+0.8
2,111,865	+		Dshi_1994	0.54	+0.0
2,111,885	+		Dshi_1994	0.56	-1.6
2,111,890	+		Dshi_1994	0.57	-2.3
2,111,898	-		Dshi_1994	0.57	-0.6
2,111,898	-		Dshi_1994	0.57	+0.0
2,111,919	-		Dshi_1994	0.59	+0.0
2,111,920	+		Dshi_1994	0.59	+0.0
2,111,920	-		Dshi_1994	0.59	-0.3
2,111,930	-		Dshi_1994	0.60	+0.0
2,111,989	+		Dshi_1994	0.65	-1.6
2,111,989	+		Dshi_1994	0.65	+0.0
2,111,989	-		Dshi_1994	0.65	+0.2
2,111,997	-		Dshi_1994	0.66	-1.6
2,111,997	-		Dshi_1994	0.66	-0.4
2,112,048	-		Dshi_1994	0.70	+1.0
2,112,059	-		Dshi_1994	0.71	-2.6
2,112,063	+		Dshi_1994	0.71	+0.1
2,112,073	-		Dshi_1994	0.72	-1.6
2,112,087	+		Dshi_1994	0.74	-3.4
2,112,092	+		Dshi_1994	0.74	-0.7
2,112,102	+		Dshi_1994	0.75	+3.2
2,112,103	+		Dshi_1994	0.75	+1.6
2,112,110	-		Dshi_1994	0.76	+0.0
2,112,142	-		Dshi_1994	0.78	+1.3
2,112,176	+		Dshi_1994	0.81	-2.3
2,112,200	+		Dshi_1994	0.83	+0.0
2,112,205	+		Dshi_1994	0.84	+1.3
2,112,208	-		Dshi_1994	0.84	+0.0
2,112,213	-		Dshi_1994	0.84	-2.6
2,112,214	+		Dshi_1994	0.84	+1.4
2,112,255	-		Dshi_1994	0.88	-1.1
2,112,321	+				-1.6
2,112,321	+				+1.0
2,112,321	+				+0.8
2,112,321	+				+0.0
2,112,329	-				-0.6
2,112,329	-				+2.0
2,112,329	-				-3.6
2,112,329	-				+0.0
2,112,329	-				-0.7
2,112,329	-				-2.2
2,112,329	-				-3.2
2,112,332	+				+0.4
2,112,340	-				+2.0
2,112,401	-				+0.6
2,112,420	-				+0.6
2,112,494	-				+0.4
2,112,524	+				-0.6
2,112,529	+				+0.0
2,112,538	+				-2.6
2,112,545	-				-0.8
2,112,666	+				-0.5
2,112,679	+				-3.4
2,112,696	+				-0.9
2,112,736	-				-0.6
2,112,770	-				-1.0
2,112,770	-				-4.2
2,112,843	+				-2.0
2,112,843	+				+0.2
2,112,843	+				+0.8
2,112,957	+				-0.1
2,112,988	+				+0.3
2,113,005	-				-1.6
2,113,009	+				+2.0
2,113,017	-				+0.0
2,113,049	+				-1.6
2,113,059	+				-0.1
2,113,070	+				+0.0
2,113,070	+				+1.3
2,113,078	-				-1.0
2,113,080	+				-0.1
2,113,088	-				-0.3
2,113,088	-				+2.2
2,113,093	+				-2.1
2,113,122	+				-0.2
2,113,143	+				-1.1
2,113,145	+				-4.6
2,113,153	-				-3.3
2,113,166	+				+0.1
2,113,167	+				-2.0
2,113,168	+				+2.6
2,113,175	-				+0.0
2,113,176	+				-3.3
2,113,176	+				-1.0
2,113,176	+				-2.1
2,113,176	+				-1.7
2,113,176	+				+0.0
2,113,176	+				+2.6
2,113,176	+				-0.9
2,113,176	+				+2.8
2,113,176	+				+0.0
2,113,176	+				+1.2
2,113,176	+				-2.8
2,113,176	+				-0.6
2,113,176	+				-1.2
2,113,176	+				-2.5
2,113,176	+				-1.4
2,113,176	+				-0.9
2,113,176	+				+0.5
2,113,176	+				-2.8
2,113,176	+				-1.0
2,113,176	+				-0.7
2,113,176	+				-1.4
2,113,176	+				-0.3
2,113,176	+				-1.0
2,113,176	+				+1.5
2,113,176	+				-1.0
2,113,176	+				-0.8
2,113,176	+				-0.9
2,113,176	+				+0.8
2,113,176	+				+3.0
2,113,176	+				-1.2
2,113,176	+				+0.0
2,113,184	+				-2.8
2,113,184	-				+1.6
2,113,184	-				+1.3
2,113,184	-				+0.0
2,113,184	-				+2.0
2,113,184	-				+1.4
2,113,184	-				+1.0
2,113,184	-				+0.0
2,113,184	-				-1.0
2,113,184	-				-1.7
2,113,184	-				+0.9
2,113,184	-				-0.6
2,113,184	-				-1.6
2,113,184	-				-1.4
2,113,184	-				+0.0
2,113,184	-				-2.3
2,113,184	-				-4.7
2,113,184	-				-0.8
2,113,184	-				-0.3
2,113,184	-				-3.6
2,113,184	-				-2.2
2,113,184	-				-2.3
2,113,184	-				-1.1
2,113,184	-				-1.6
2,113,184	-				+0.0
2,113,184	-				-1.8
2,113,184	-				+0.0
2,113,184	-				-2.3
2,113,184	-				+0.0
2,113,184	-				-1.2
2,113,184	-				-1.0
2,113,184	-				-3.2
2,113,184	-				+3.5
2,113,184	-				-2.8
2,113,184	-				-1.2
2,113,184	-				-4.6
2,113,184	-				+2.8
2,113,184	-				+1.6
2,113,184	-				-0.3
2,113,184	-				+0.0
2,113,184	-				+0.0
2,113,184	-				-1.4
2,113,184	-				+0.0
2,113,184	-				+0.4
2,113,184	-				+0.0
2,113,184	-				+0.6
2,113,184	-				-1.2
2,113,184	-				-2.0
2,113,184	-				+0.0
2,113,184	-				-0.7
2,113,184	-				+0.3
2,113,184	-				+1.0
2,113,185	-				-1.0
2,113,189	+				-0.0
2,113,194	-				+2.3
2,113,197	-				+0.0
2,113,199	+				-3.0
2,113,201	+				-1.6
2,113,201	+				-3.3
2,113,207	-				-2.3
2,113,207	-				-0.4
2,113,207	-				-1.3
2,113,207	-				-0.4
2,113,207	-				-1.0
2,113,211	+				-0.1
2,113,211	+				-0.3
2,113,213	+				+0.0
2,113,221	+				-2.3
2,113,221	+				+2.6
2,113,221	+				+0.0
2,113,221	+				+3.0
2,113,221	+				-1.6
2,113,221	+				-0.4
2,113,221	+				-3.8
2,113,221	-				-0.2
2,113,221	-				-4.2
2,113,221	-				-2.3
2,113,229	-				-1.0
2,113,229	-				+1.0
2,113,229	-				-2.8
2,113,229	-				-2.7
2,113,229	-				-0.7
2,113,229	-				+0.6
2,113,229	-				+0.4
2,113,229	-				-2.6
2,113,229	-				+2.3
2,113,229	-				+0.0
2,113,233	+				-1.3
2,113,233	+				-1.3
2,113,233	+				-2.0
2,113,233	+				+2.8
2,113,233	+				-1.5
2,113,233	+				+0.0
2,113,233	+				-1.0
2,113,233	+				+0.0
2,113,233	+				-4.0
2,113,233	+				+2.6
2,113,233	+				+0.1
2,113,233	+				-2.1
2,113,233	+				+1.0
2,113,233	+				+1.1
2,113,233	+				-2.6
2,113,233	+				+2.0
2,113,233	+				+0.4
2,113,233	+				-0.5
2,113,234	+				-0.7
2,113,234	+				+0.4
2,113,234	+				-3.3
2,113,234	+				-0.6
2,113,234	+				-0.7
2,113,234	+				-0.3
2,113,236	+				+0.0
2,113,241	-				-0.6
2,113,241	-				-3.0
2,113,241	-				-1.0
2,113,241	-				-1.3
2,113,241	-				-2.3
2,113,241	-				+0.6
2,113,242	-				+0.0
2,113,242	-				-1.5
2,113,242	-				+1.6
2,113,242	-				-2.0
2,113,244	+				+1.3
2,113,244	+				-0.8
2,113,244	+				-0.3
2,113,254	-				-2.4
2,113,290	+				-2.0
2,113,368	+				-1.3
2,113,379	+				+0.0
2,113,381	+				-0.5
2,113,381	+				+3.0
2,113,387	-				-1.0
2,113,387	-				+0.3
2,113,387	-				-3.0
2,113,389	-				-3.6
2,113,392	+				-2.8
2,113,392	+				-2.0