Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1970

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_5004 and Dshi_1970 overlap by 1 nucleotidesDshi_1970 and Dshi_1971 are separated by 120 nucleotides Dshi_5004: Dshi_5004 - D-lactate dehydrogenase (RefSeq), at 2,080,128 to 2,081,843 _5004 Dshi_1970: Dshi_1970 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,081,843 to 2,083,909 _1970 Dshi_1971: Dshi_1971 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,084,030 to 2,085,007 _1971 Position (kb) 2081 2082 2083 2084Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2080.923 kb on + strand, within Dshi_5004at 2080.945 kb on + strand, within Dshi_5004at 2080.953 kb on - strand, within Dshi_5004at 2080.988 kb on + strand, within Dshi_5004at 2081.244 kb on + strand, within Dshi_5004at 2081.261 kb on + strand, within Dshi_5004at 2081.308 kb on + strand, within Dshi_5004at 2081.308 kb on + strand, within Dshi_5004at 2081.341 kb on - strand, within Dshi_5004at 2081.346 kb on - strand, within Dshi_5004at 2081.346 kb on - strand, within Dshi_5004at 2081.346 kb on - strand, within Dshi_5004at 2081.356 kb on - strand, within Dshi_5004at 2081.405 kb on + strand, within Dshi_5004at 2081.553 kb on + strand, within Dshi_5004at 2081.553 kb on + strand, within Dshi_5004at 2081.556 kb on - strand, within Dshi_5004at 2081.556 kb on - strand, within Dshi_5004at 2081.572 kb on - strand, within Dshi_5004at 2081.596 kb on + strand, within Dshi_5004at 2081.663 kb on - strand, within Dshi_5004at 2081.745 kb on + strandat 2081.767 kb on + strandat 2081.811 kb on - strandat 2081.834 kb on - strandat 2081.899 kb on - strandat 2081.979 kb on - strandat 2081.985 kb on + strandat 2081.993 kb on - strandat 2082.013 kb on - strandat 2082.085 kb on + strand, within Dshi_1970at 2082.102 kb on + strand, within Dshi_1970at 2082.239 kb on + strand, within Dshi_1970at 2082.241 kb on - strand, within Dshi_1970at 2082.291 kb on + strand, within Dshi_1970at 2082.334 kb on - strand, within Dshi_1970at 2082.368 kb on - strand, within Dshi_1970at 2082.378 kb on - strand, within Dshi_1970at 2082.447 kb on - strand, within Dshi_1970at 2082.488 kb on + strand, within Dshi_1970at 2082.616 kb on + strand, within Dshi_1970at 2082.639 kb on + strand, within Dshi_1970at 2082.748 kb on - strand, within Dshi_1970at 2083.009 kb on - strand, within Dshi_1970at 2083.085 kb on + strand, within Dshi_1970at 2083.090 kb on + strand, within Dshi_1970at 2083.095 kb on + strand, within Dshi_1970at 2083.142 kb on + strand, within Dshi_1970at 2083.162 kb on + strand, within Dshi_1970at 2083.314 kb on - strand, within Dshi_1970at 2083.327 kb on - strand, within Dshi_1970at 2083.442 kb on + strand, within Dshi_1970at 2083.449 kb on + strand, within Dshi_1970at 2083.449 kb on + strand, within Dshi_1970at 2083.623 kb on - strand, within Dshi_1970at 2083.636 kb on + strand, within Dshi_1970at 2083.644 kb on - strand, within Dshi_1970at 2083.735 kb on - strandat 2083.927 kb on - strandat 2084.014 kb on - strandat 2084.073 kb on - strandat 2084.097 kb on + strandat 2084.146 kb on + strand, within Dshi_1971at 2084.170 kb on + strand, within Dshi_1971at 2084.250 kb on + strand, within Dshi_1971at 2084.264 kb on - strand, within Dshi_1971at 2084.315 kb on - strand, within Dshi_1971at 2084.315 kb on - strand, within Dshi_1971at 2084.315 kb on - strand, within Dshi_1971at 2084.334 kb on - strand, within Dshi_1971at 2084.382 kb on - strand, within Dshi_1971at 2084.465 kb on + strand, within Dshi_1971at 2084.685 kb on - strand, within Dshi_1971at 2084.751 kb on - strand, within Dshi_1971at 2084.751 kb on - strand, within Dshi_1971at 2084.763 kb on + strand, within Dshi_1971at 2084.771 kb on + strand, within Dshi_1971at 2084.771 kb on - strand, within Dshi_1971at 2084.841 kb on - strand, within Dshi_1971

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,080,923 + Dshi_5004 0.46 +0.7
2,080,945 + Dshi_5004 0.48 -0.9
2,080,953 - Dshi_5004 0.48 +2.0
2,080,988 + Dshi_5004 0.50 +2.6
2,081,244 + Dshi_5004 0.65 -0.6
2,081,261 + Dshi_5004 0.66 +0.0
2,081,308 + Dshi_5004 0.69 +0.8
2,081,308 + Dshi_5004 0.69 +0.0
2,081,341 - Dshi_5004 0.71 +1.1
2,081,346 - Dshi_5004 0.71 -1.7
2,081,346 - Dshi_5004 0.71 -2.9
2,081,346 - Dshi_5004 0.71 +0.1
2,081,356 - Dshi_5004 0.72 -2.9
2,081,405 + Dshi_5004 0.74 +0.0
2,081,553 + Dshi_5004 0.83 -1.2
2,081,553 + Dshi_5004 0.83 -1.9
2,081,556 - Dshi_5004 0.83 -0.1
2,081,556 - Dshi_5004 0.83 -0.3
2,081,572 - Dshi_5004 0.84 +0.0
2,081,596 + Dshi_5004 0.86 +2.3
2,081,663 - Dshi_5004 0.89 -0.8
2,081,745 + -2.0
2,081,767 + -0.9
2,081,811 - -3.1
2,081,834 - +0.1
2,081,899 - -4.0
2,081,979 - -0.3
2,081,985 + -1.6
2,081,993 - +0.9
2,082,013 - -1.5
2,082,085 + Dshi_1970 0.12 -0.2
2,082,102 + Dshi_1970 0.13 +0.3
2,082,239 + Dshi_1970 0.19 +0.6
2,082,241 - Dshi_1970 0.19 -0.9
2,082,291 + Dshi_1970 0.22 +0.6
2,082,334 - Dshi_1970 0.24 -1.9
2,082,368 - Dshi_1970 0.25 +2.6
2,082,378 - Dshi_1970 0.26 +0.8
2,082,447 - Dshi_1970 0.29 -0.9
2,082,488 + Dshi_1970 0.31 +1.1
2,082,616 + Dshi_1970 0.37 -0.3
2,082,639 + Dshi_1970 0.39 -1.7
2,082,748 - Dshi_1970 0.44 +0.4
2,083,009 - Dshi_1970 0.56 +2.0
2,083,085 + Dshi_1970 0.60 +3.0
2,083,090 + Dshi_1970 0.60 +2.0
2,083,095 + Dshi_1970 0.61 +3.5
2,083,142 + Dshi_1970 0.63 -0.5
2,083,162 + Dshi_1970 0.64 -0.6
2,083,314 - Dshi_1970 0.71 +0.9
2,083,327 - Dshi_1970 0.72 -2.4
2,083,442 + Dshi_1970 0.77 +0.6
2,083,449 + Dshi_1970 0.78 +0.3
2,083,449 + Dshi_1970 0.78 -0.2
2,083,623 - Dshi_1970 0.86 +3.7
2,083,636 + Dshi_1970 0.87 -1.4
2,083,644 - Dshi_1970 0.87 -1.1
2,083,735 - -1.2
2,083,927 - -0.4
2,084,014 - +0.9
2,084,073 - +0.6
2,084,097 + -0.8
2,084,146 + Dshi_1971 0.12 -0.1
2,084,170 + Dshi_1971 0.14 +0.9
2,084,250 + Dshi_1971 0.22 -0.6
2,084,264 - Dshi_1971 0.24 -1.3
2,084,315 - Dshi_1971 0.29 -0.5
2,084,315 - Dshi_1971 0.29 -0.7
2,084,315 - Dshi_1971 0.29 +3.2
2,084,334 - Dshi_1971 0.31 +3.2
2,084,382 - Dshi_1971 0.36 -0.1
2,084,465 + Dshi_1971 0.44 +0.4
2,084,685 - Dshi_1971 0.67 +1.8
2,084,751 - Dshi_1971 0.74 -0.9
2,084,751 - Dshi_1971 0.74 -3.1
2,084,763 + Dshi_1971 0.75 -1.0
2,084,771 + Dshi_1971 0.76 -2.1
2,084,771 - Dshi_1971 0.76 +0.9
2,084,841 - Dshi_1971 0.83 +0.0

Or see this region's nucleotide sequence