Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_5004 and Dshi_1970 overlap by 1 nucleotides Dshi_1970 and Dshi_1971 are separated by 120 nucleotides
Dshi_5004: Dshi_5004 - D-lactate dehydrogenase (RefSeq), at 2,080,128 to 2,081,843
_5004
Dshi_1970: Dshi_1970 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,081,843 to 2,083,909
_1970
Dshi_1971: Dshi_1971 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 2,084,030 to 2,085,007
_1971
Position (kb)
2081
2082
2083
2084 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2080.923 kb on + strand, within Dshi_5004 at 2080.945 kb on + strand, within Dshi_5004 at 2080.953 kb on - strand, within Dshi_5004 at 2080.988 kb on + strand, within Dshi_5004 at 2081.244 kb on + strand, within Dshi_5004 at 2081.261 kb on + strand, within Dshi_5004 at 2081.308 kb on + strand, within Dshi_5004 at 2081.308 kb on + strand, within Dshi_5004 at 2081.341 kb on - strand, within Dshi_5004 at 2081.346 kb on - strand, within Dshi_5004 at 2081.346 kb on - strand, within Dshi_5004 at 2081.346 kb on - strand, within Dshi_5004 at 2081.356 kb on - strand, within Dshi_5004 at 2081.405 kb on + strand, within Dshi_5004 at 2081.553 kb on + strand, within Dshi_5004 at 2081.553 kb on + strand, within Dshi_5004 at 2081.556 kb on - strand, within Dshi_5004 at 2081.556 kb on - strand, within Dshi_5004 at 2081.572 kb on - strand, within Dshi_5004 at 2081.596 kb on + strand, within Dshi_5004 at 2081.663 kb on - strand, within Dshi_5004 at 2081.745 kb on + strand at 2081.767 kb on + strand at 2081.811 kb on - strand at 2081.834 kb on - strand at 2081.899 kb on - strand at 2081.979 kb on - strand at 2081.985 kb on + strand at 2081.993 kb on - strand at 2082.013 kb on - strand at 2082.085 kb on + strand, within Dshi_1970 at 2082.102 kb on + strand, within Dshi_1970 at 2082.239 kb on + strand, within Dshi_1970 at 2082.241 kb on - strand, within Dshi_1970 at 2082.291 kb on + strand, within Dshi_1970 at 2082.334 kb on - strand, within Dshi_1970 at 2082.368 kb on - strand, within Dshi_1970 at 2082.378 kb on - strand, within Dshi_1970 at 2082.447 kb on - strand, within Dshi_1970 at 2082.488 kb on + strand, within Dshi_1970 at 2082.616 kb on + strand, within Dshi_1970 at 2082.639 kb on + strand, within Dshi_1970 at 2082.748 kb on - strand, within Dshi_1970 at 2083.009 kb on - strand, within Dshi_1970 at 2083.085 kb on + strand, within Dshi_1970 at 2083.090 kb on + strand, within Dshi_1970 at 2083.095 kb on + strand, within Dshi_1970 at 2083.142 kb on + strand, within Dshi_1970 at 2083.162 kb on + strand, within Dshi_1970 at 2083.314 kb on - strand, within Dshi_1970 at 2083.327 kb on - strand, within Dshi_1970 at 2083.442 kb on + strand, within Dshi_1970 at 2083.449 kb on + strand, within Dshi_1970 at 2083.449 kb on + strand, within Dshi_1970 at 2083.623 kb on - strand, within Dshi_1970 at 2083.636 kb on + strand, within Dshi_1970 at 2083.644 kb on - strand, within Dshi_1970 at 2083.735 kb on - strand at 2083.927 kb on - strand at 2084.014 kb on - strand at 2084.073 kb on - strand at 2084.097 kb on + strand at 2084.146 kb on + strand, within Dshi_1971 at 2084.170 kb on + strand, within Dshi_1971 at 2084.250 kb on + strand, within Dshi_1971 at 2084.264 kb on - strand, within Dshi_1971 at 2084.315 kb on - strand, within Dshi_1971 at 2084.315 kb on - strand, within Dshi_1971 at 2084.315 kb on - strand, within Dshi_1971 at 2084.334 kb on - strand, within Dshi_1971 at 2084.382 kb on - strand, within Dshi_1971 at 2084.465 kb on + strand, within Dshi_1971 at 2084.685 kb on - strand, within Dshi_1971 at 2084.751 kb on - strand, within Dshi_1971 at 2084.751 kb on - strand, within Dshi_1971 at 2084.763 kb on + strand, within Dshi_1971 at 2084.771 kb on + strand, within Dshi_1971 at 2084.771 kb on - strand, within Dshi_1971 at 2084.841 kb on - strand, within Dshi_1971
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 2,080,923 + Dshi_5004 0.46 +0.7 2,080,945 + Dshi_5004 0.48 -0.9 2,080,953 - Dshi_5004 0.48 +2.0 2,080,988 + Dshi_5004 0.50 +2.6 2,081,244 + Dshi_5004 0.65 -0.6 2,081,261 + Dshi_5004 0.66 +0.0 2,081,308 + Dshi_5004 0.69 +0.8 2,081,308 + Dshi_5004 0.69 +0.0 2,081,341 - Dshi_5004 0.71 +1.1 2,081,346 - Dshi_5004 0.71 -1.7 2,081,346 - Dshi_5004 0.71 -2.9 2,081,346 - Dshi_5004 0.71 +0.1 2,081,356 - Dshi_5004 0.72 -2.9 2,081,405 + Dshi_5004 0.74 +0.0 2,081,553 + Dshi_5004 0.83 -1.2 2,081,553 + Dshi_5004 0.83 -1.9 2,081,556 - Dshi_5004 0.83 -0.1 2,081,556 - Dshi_5004 0.83 -0.3 2,081,572 - Dshi_5004 0.84 +0.0 2,081,596 + Dshi_5004 0.86 +2.3 2,081,663 - Dshi_5004 0.89 -0.8 2,081,745 + -2.0 2,081,767 + -0.9 2,081,811 - -3.1 2,081,834 - +0.1 2,081,899 - -4.0 2,081,979 - -0.3 2,081,985 + -1.6 2,081,993 - +0.9 2,082,013 - -1.5 2,082,085 + Dshi_1970 0.12 -0.2 2,082,102 + Dshi_1970 0.13 +0.3 2,082,239 + Dshi_1970 0.19 +0.6 2,082,241 - Dshi_1970 0.19 -0.9 2,082,291 + Dshi_1970 0.22 +0.6 2,082,334 - Dshi_1970 0.24 -1.9 2,082,368 - Dshi_1970 0.25 +2.6 2,082,378 - Dshi_1970 0.26 +0.8 2,082,447 - Dshi_1970 0.29 -0.9 2,082,488 + Dshi_1970 0.31 +1.1 2,082,616 + Dshi_1970 0.37 -0.3 2,082,639 + Dshi_1970 0.39 -1.7 2,082,748 - Dshi_1970 0.44 +0.4 2,083,009 - Dshi_1970 0.56 +2.0 2,083,085 + Dshi_1970 0.60 +3.0 2,083,090 + Dshi_1970 0.60 +2.0 2,083,095 + Dshi_1970 0.61 +3.5 2,083,142 + Dshi_1970 0.63 -0.5 2,083,162 + Dshi_1970 0.64 -0.6 2,083,314 - Dshi_1970 0.71 +0.9 2,083,327 - Dshi_1970 0.72 -2.4 2,083,442 + Dshi_1970 0.77 +0.6 2,083,449 + Dshi_1970 0.78 +0.3 2,083,449 + Dshi_1970 0.78 -0.2 2,083,623 - Dshi_1970 0.86 +3.7 2,083,636 + Dshi_1970 0.87 -1.4 2,083,644 - Dshi_1970 0.87 -1.1 2,083,735 - -1.2 2,083,927 - -0.4 2,084,014 - +0.9 2,084,073 - +0.6 2,084,097 + -0.8 2,084,146 + Dshi_1971 0.12 -0.1 2,084,170 + Dshi_1971 0.14 +0.9 2,084,250 + Dshi_1971 0.22 -0.6 2,084,264 - Dshi_1971 0.24 -1.3 2,084,315 - Dshi_1971 0.29 -0.5 2,084,315 - Dshi_1971 0.29 -0.7 2,084,315 - Dshi_1971 0.29 +3.2 2,084,334 - Dshi_1971 0.31 +3.2 2,084,382 - Dshi_1971 0.36 -0.1 2,084,465 + Dshi_1971 0.44 +0.4 2,084,685 - Dshi_1971 0.67 +1.8 2,084,751 - Dshi_1971 0.74 -0.9 2,084,751 - Dshi_1971 0.74 -3.1 2,084,763 + Dshi_1971 0.75 -1.0 2,084,771 + Dshi_1971 0.76 -2.1 2,084,771 - Dshi_1971 0.76 +0.9 2,084,841 - Dshi_1971 0.83 +0.0
Or see this region's nucleotide sequence