Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1937

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1936 and Dshi_1937 overlap by 4 nucleotidesDshi_1937 and Dshi_1938 are separated by 116 nucleotides Dshi_1936: Dshi_1936 - hypothetical protein (RefSeq), at 2,024,978 to 2,025,994 _1936 Dshi_1937: Dshi_1937 - protein of unknown function DUF463 YcjX family protein (RefSeq), at 2,025,991 to 2,027,403 _1937 Dshi_1938: Dshi_1938 - tRNA pseudouridine synthase A (RefSeq), at 2,027,520 to 2,028,293 _1938 Position (kb) 2025 2026 2027 2028Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2025.006 kb on + strandat 2025.052 kb on + strandat 2025.098 kb on - strand, within Dshi_1936at 2025.235 kb on - strand, within Dshi_1936at 2025.279 kb on + strand, within Dshi_1936at 2025.487 kb on - strand, within Dshi_1936at 2025.590 kb on + strand, within Dshi_1936at 2025.645 kb on - strand, within Dshi_1936at 2025.724 kb on + strand, within Dshi_1936at 2025.745 kb on + strand, within Dshi_1936at 2025.791 kb on - strand, within Dshi_1936at 2025.896 kb on - strandat 2025.926 kb on + strandat 2026.090 kb on - strandat 2026.304 kb on + strand, within Dshi_1937at 2026.397 kb on - strand, within Dshi_1937at 2026.403 kb on + strand, within Dshi_1937at 2026.465 kb on + strand, within Dshi_1937at 2026.617 kb on - strand, within Dshi_1937at 2026.642 kb on - strand, within Dshi_1937at 2026.677 kb on + strand, within Dshi_1937at 2026.757 kb on - strand, within Dshi_1937at 2027.290 kb on + strandat 2027.298 kb on - strandat 2027.358 kb on - strandat 2027.358 kb on - strandat 2027.358 kb on - strandat 2027.439 kb on - strandat 2027.504 kb on + strandat 2027.515 kb on + strandat 2027.701 kb on - strand, within Dshi_1938at 2027.752 kb on - strand, within Dshi_1938at 2027.854 kb on - strand, within Dshi_1938

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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2,025,006 + -3.1
2,025,052 + -2.1
2,025,098 - Dshi_1936 0.12 +1.0
2,025,235 - Dshi_1936 0.25 -0.8
2,025,279 + Dshi_1936 0.30 +1.0
2,025,487 - Dshi_1936 0.50 +0.0
2,025,590 + Dshi_1936 0.60 +2.6
2,025,645 - Dshi_1936 0.66 +0.7
2,025,724 + Dshi_1936 0.73 +0.0
2,025,745 + Dshi_1936 0.75 -1.6
2,025,791 - Dshi_1936 0.80 +0.0
2,025,896 - +0.0
2,025,926 + +1.7
2,026,090 - -4.1
2,026,304 + Dshi_1937 0.22 +0.0
2,026,397 - Dshi_1937 0.29 +3.5
2,026,403 + Dshi_1937 0.29 -1.3
2,026,465 + Dshi_1937 0.34 -1.1
2,026,617 - Dshi_1937 0.44 +0.0
2,026,642 - Dshi_1937 0.46 +0.0
2,026,677 + Dshi_1937 0.49 +2.5
2,026,757 - Dshi_1937 0.54 +0.0
2,027,290 + -1.6
2,027,298 - -1.8
2,027,358 - +0.0
2,027,358 - -1.6
2,027,358 - -2.6
2,027,439 - -2.0
2,027,504 + -3.1
2,027,515 + -1.6
2,027,701 - Dshi_1938 0.23 -0.3
2,027,752 - Dshi_1938 0.30 -2.3
2,027,854 - Dshi_1938 0.43 +1.8

Or see this region's nucleotide sequence