Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1881 and Dshi_1882 overlap by 4 nucleotides Dshi_1882 and Dshi_1883 are separated by 219 nucleotides Dshi_1883 and Dshi_1884 are separated by 129 nucleotides Dshi_1884 and Dshi_1885 are separated by 132 nucleotides
Dshi_1881: Dshi_1881 - hypothetical protein (RefSeq), at 1,958,592 to 1,959,968
_1881
Dshi_1882: Dshi_1882 - GCN5-related N-acetyltransferase (RefSeq), at 1,959,965 to 1,960,423
_1882
Dshi_1883: Dshi_1883 - AAA ATPase central domain protein (RefSeq), at 1,960,643 to 1,961,485
_1883
Dshi_1884: Dshi_1884 - transcriptional regulator, TraR/DksA family (RefSeq), at 1,961,615 to 1,962,088
_1884
Dshi_1885: Dshi_1885 - monooxygenase FAD-binding (RefSeq), at 1,962,221 to 1,963,390
_1885
Position (kb)
1960
1961
1962 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1959.922 kb on + strand at 1960.183 kb on - strand, within Dshi_1882 at 1960.305 kb on + strand, within Dshi_1882 at 1960.305 kb on + strand, within Dshi_1882 at 1960.313 kb on - strand, within Dshi_1882 at 1960.376 kb on + strand, within Dshi_1882 at 1960.416 kb on - strand at 1960.476 kb on + strand at 1960.504 kb on - strand at 1960.800 kb on - strand, within Dshi_1883 at 1960.878 kb on + strand, within Dshi_1883 at 1961.341 kb on - strand, within Dshi_1883 at 1961.362 kb on + strand, within Dshi_1883 at 1961.414 kb on + strand at 1961.493 kb on + strand at 1961.668 kb on - strand, within Dshi_1884 at 1961.782 kb on + strand, within Dshi_1884 at 1962.149 kb on + strand at 1962.157 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 1,959,922 + -3.1 1,960,183 - Dshi_1882 0.47 -1.0 1,960,305 + Dshi_1882 0.74 +1.3 1,960,305 + Dshi_1882 0.74 -2.0 1,960,313 - Dshi_1882 0.76 -3.2 1,960,376 + Dshi_1882 0.90 -1.0 1,960,416 - -3.3 1,960,476 + -1.6 1,960,504 - -0.8 1,960,800 - Dshi_1883 0.19 -0.4 1,960,878 + Dshi_1883 0.28 +0.7 1,961,341 - Dshi_1883 0.83 -1.8 1,961,362 + Dshi_1883 0.85 +2.3 1,961,414 + +3.7 1,961,493 + -2.0 1,961,668 - Dshi_1884 0.11 +0.0 1,961,782 + Dshi_1884 0.35 +0.0 1,962,149 + -0.7 1,962,157 - -1.2
Or see this region's nucleotide sequence