Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1845

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1842 and Dshi_1843 are separated by 99 nucleotidesDshi_1843 and Dshi_1844 are separated by 104 nucleotidesDshi_1844 and Dshi_1845 are separated by 56 nucleotidesDshi_1845 and Dshi_1846 are separated by 381 nucleotidesDshi_1846 and Dshi_1847 are separated by 98 nucleotides Dshi_1842: Dshi_1842 - adenylosuccinate lyase (RefSeq), at 1,923,555 to 1,924,907 _1842 Dshi_1843: Dshi_1843 - hypothetical protein (RefSeq), at 1,925,007 to 1,925,174 _1843 Dshi_1844: Dshi_1844 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 1,925,279 to 1,925,812 _1844 Dshi_1845: Dshi_1845 - flagellar motor switch protein FliG (RefSeq), at 1,925,869 to 1,926,918 _1845 Dshi_1846: Dshi_1846 - hypothetical protein (RefSeq), at 1,927,300 to 1,927,743 _1846 Dshi_1847: Dshi_1847 - hypothetical protein (RefSeq), at 1,927,842 to 1,928,210 _1847 Position (kb) 1925 1926 1927Strain fitness (log2 ratio) -2 -1 0 1 2at 1924.974 kb on + strandat 1925.056 kb on + strand, within Dshi_1843at 1925.064 kb on - strand, within Dshi_1843at 1925.111 kb on - strand, within Dshi_1843at 1925.257 kb on + strandat 1925.265 kb on - strandat 1925.318 kb on + strandat 1925.398 kb on - strand, within Dshi_1844at 1925.443 kb on - strand, within Dshi_1844at 1925.614 kb on + strand, within Dshi_1844at 1925.662 kb on + strand, within Dshi_1844at 1925.670 kb on - strand, within Dshi_1844at 1925.762 kb on + strandat 1925.967 kb on - strandat 1926.051 kb on + strand, within Dshi_1845at 1926.083 kb on - strand, within Dshi_1845at 1926.116 kb on + strand, within Dshi_1845at 1926.120 kb on + strand, within Dshi_1845at 1926.124 kb on - strand, within Dshi_1845at 1926.298 kb on + strand, within Dshi_1845at 1926.352 kb on - strand, within Dshi_1845at 1926.604 kb on - strand, within Dshi_1845at 1926.674 kb on + strand, within Dshi_1845at 1926.682 kb on - strand, within Dshi_1845at 1926.702 kb on - strand, within Dshi_1845at 1926.841 kb on + strandat 1926.920 kb on - strandat 1926.926 kb on + strandat 1926.955 kb on - strandat 1927.076 kb on - strandat 1927.254 kb on + strandat 1927.254 kb on + strandat 1927.338 kb on - strandat 1927.348 kb on - strand, within Dshi_1846at 1927.354 kb on + strand, within Dshi_1846at 1927.365 kb on + strand, within Dshi_1846at 1927.480 kb on - strand, within Dshi_1846at 1927.622 kb on - strand, within Dshi_1846at 1927.670 kb on + strand, within Dshi_1846at 1927.678 kb on - strand, within Dshi_1846at 1927.723 kb on - strandat 1927.761 kb on + strandat 1927.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,924,974 + +0.8
1,925,056 + Dshi_1843 0.29 -0.2
1,925,064 - Dshi_1843 0.34 +0.3
1,925,111 - Dshi_1843 0.62 -0.4
1,925,257 + -2.1
1,925,265 - -0.2
1,925,318 + +0.0
1,925,398 - Dshi_1844 0.22 +0.7
1,925,443 - Dshi_1844 0.31 +0.7
1,925,614 + Dshi_1844 0.63 -0.6
1,925,662 + Dshi_1844 0.72 -0.9
1,925,670 - Dshi_1844 0.73 +0.0
1,925,762 + -1.3
1,925,967 - -1.1
1,926,051 + Dshi_1845 0.17 +1.0
1,926,083 - Dshi_1845 0.20 -0.8
1,926,116 + Dshi_1845 0.24 -1.4
1,926,120 + Dshi_1845 0.24 +1.1
1,926,124 - Dshi_1845 0.24 -0.4
1,926,298 + Dshi_1845 0.41 -0.3
1,926,352 - Dshi_1845 0.46 -0.8
1,926,604 - Dshi_1845 0.70 -0.5
1,926,674 + Dshi_1845 0.77 -2.5
1,926,682 - Dshi_1845 0.77 -2.4
1,926,702 - Dshi_1845 0.79 -0.0
1,926,841 + -2.5
1,926,920 - -0.3
1,926,926 + -1.2
1,926,955 - -1.5
1,927,076 - +0.9
1,927,254 + +2.1
1,927,254 + +0.0
1,927,338 - +1.0
1,927,348 - Dshi_1846 0.11 -1.2
1,927,354 + Dshi_1846 0.12 -1.5
1,927,365 + Dshi_1846 0.15 -2.5
1,927,480 - Dshi_1846 0.41 -1.2
1,927,622 - Dshi_1846 0.73 +1.2
1,927,670 + Dshi_1846 0.83 +0.2
1,927,678 - Dshi_1846 0.85 +0.0
1,927,723 - -0.5
1,927,761 + +0.0
1,927,852 + +0.8

Or see this region's nucleotide sequence