Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1753

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1751 and Dshi_1752 overlap by 4 nucleotidesDshi_1752 and Dshi_1753 are separated by 61 nucleotidesDshi_1753 and Dshi_1754 are separated by 90 nucleotidesDshi_1754 and Dshi_1755 overlap by 8 nucleotidesDshi_1755 and Dshi_1756 overlap by 11 nucleotides Dshi_1751: Dshi_1751 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,817,193 to 1,818,239 _1751 Dshi_1752: Dshi_1752 - 3-hydroxyisobutyrate dehydrogenase (RefSeq), at 1,818,236 to 1,819,111 _1752 Dshi_1753: Dshi_1753 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,819,173 to 1,819,949 _1753 Dshi_1754: Dshi_1754 - hypothetical protein (RefSeq), at 1,820,040 to 1,820,456 _1754 Dshi_1755: Dshi_1755 - hypothetical protein (RefSeq), at 1,820,449 to 1,820,655 _1755 Dshi_1756: Dshi_1756 - hypothetical protein (RefSeq), at 1,820,645 to 1,821,166 _1756 Position (kb) 1819 1820Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1818.609 kb on + strand, within Dshi_1752at 1818.778 kb on - strand, within Dshi_1752at 1818.839 kb on + strand, within Dshi_1752at 1818.847 kb on - strand, within Dshi_1752at 1818.910 kb on - strand, within Dshi_1752at 1819.029 kb on + strandat 1819.142 kb on + strandat 1819.252 kb on - strand, within Dshi_1753at 1819.419 kb on - strand, within Dshi_1753at 1819.439 kb on - strand, within Dshi_1753at 1819.456 kb on - strand, within Dshi_1753at 1819.500 kb on - strand, within Dshi_1753at 1819.615 kb on - strand, within Dshi_1753at 1819.656 kb on + strand, within Dshi_1753at 1819.766 kb on - strand, within Dshi_1753at 1819.811 kb on - strand, within Dshi_1753at 1819.936 kb on - strandat 1819.945 kb on + strandat 1819.953 kb on - strandat 1820.011 kb on - strandat 1820.188 kb on + strand, within Dshi_1754at 1820.196 kb on - strand, within Dshi_1754at 1820.202 kb on - strand, within Dshi_1754at 1820.238 kb on - strand, within Dshi_1754at 1820.366 kb on - strand, within Dshi_1754at 1820.412 kb on + strand, within Dshi_1754at 1820.420 kb on - strandat 1820.482 kb on + strand, within Dshi_1755at 1820.515 kb on + strand, within Dshi_1755at 1820.549 kb on - strand, within Dshi_1755at 1820.892 kb on - strand, within Dshi_1756at 1820.903 kb on + strand, within Dshi_1756

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,818,609 + Dshi_1752 0.43 -1.5
1,818,778 - Dshi_1752 0.62 -2.6
1,818,839 + Dshi_1752 0.69 +0.5
1,818,847 - Dshi_1752 0.70 -0.1
1,818,910 - Dshi_1752 0.77 -1.1
1,819,029 + -0.9
1,819,142 + -2.6
1,819,252 - Dshi_1753 0.10 -0.1
1,819,419 - Dshi_1753 0.32 -1.7
1,819,439 - Dshi_1753 0.34 +3.5
1,819,456 - Dshi_1753 0.36 +2.0
1,819,500 - Dshi_1753 0.42 +0.2
1,819,615 - Dshi_1753 0.57 +0.6
1,819,656 + Dshi_1753 0.62 -0.5
1,819,766 - Dshi_1753 0.76 -0.6
1,819,811 - Dshi_1753 0.82 -0.1
1,819,936 - +0.3
1,819,945 + -1.4
1,819,953 - +0.2
1,820,011 - -0.1
1,820,188 + Dshi_1754 0.35 -3.8
1,820,196 - Dshi_1754 0.37 -2.4
1,820,202 - Dshi_1754 0.39 -1.6
1,820,238 - Dshi_1754 0.47 -2.0
1,820,366 - Dshi_1754 0.78 -0.7
1,820,412 + Dshi_1754 0.89 -0.8
1,820,420 - +3.5
1,820,482 + Dshi_1755 0.16 -0.9
1,820,515 + Dshi_1755 0.32 -1.1
1,820,549 - Dshi_1755 0.48 -1.3
1,820,892 - Dshi_1756 0.47 +1.6
1,820,903 + Dshi_1756 0.49 -1.3

Or see this region's nucleotide sequence