Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1750

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1749 and Dshi_1750 are separated by 80 nucleotidesDshi_1750 and Dshi_1751 overlap by 4 nucleotides Dshi_1749: Dshi_1749 - glutamate--cysteine ligase GCS2 (RefSeq), at 1,814,843 to 1,815,970 _1749 Dshi_1750: Dshi_1750 - acyl-CoA dehydrogenase domain protein (RefSeq), at 1,816,051 to 1,817,196 _1750 Dshi_1751: Dshi_1751 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,817,193 to 1,818,239 _1751 Position (kb) 1816 1817 1818Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1815.153 kb on - strand, within Dshi_1749at 1815.205 kb on + strand, within Dshi_1749at 1815.209 kb on + strand, within Dshi_1749at 1815.242 kb on - strand, within Dshi_1749at 1815.351 kb on - strand, within Dshi_1749at 1815.374 kb on - strand, within Dshi_1749at 1815.412 kb on - strand, within Dshi_1749at 1815.570 kb on + strand, within Dshi_1749at 1815.592 kb on - strand, within Dshi_1749at 1815.619 kb on - strand, within Dshi_1749at 1815.645 kb on + strand, within Dshi_1749at 1815.755 kb on - strand, within Dshi_1749at 1815.755 kb on - strand, within Dshi_1749at 1816.132 kb on + strandat 1816.135 kb on - strandat 1816.240 kb on - strand, within Dshi_1750at 1816.258 kb on + strand, within Dshi_1750at 1816.463 kb on - strand, within Dshi_1750at 1816.532 kb on + strand, within Dshi_1750at 1816.634 kb on - strand, within Dshi_1750at 1816.685 kb on - strand, within Dshi_1750at 1816.821 kb on - strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750at 1816.875 kb on + strand, within Dshi_1750at 1817.345 kb on + strand, within Dshi_1751at 1817.388 kb on - strand, within Dshi_1751at 1817.508 kb on + strand, within Dshi_1751at 1817.898 kb on - strand, within Dshi_1751at 1817.960 kb on - strand, within Dshi_1751at 1818.070 kb on + strand, within Dshi_1751

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,815,153 - Dshi_1749 0.27 -0.5
1,815,205 + Dshi_1749 0.32 -1.2
1,815,209 + Dshi_1749 0.32 -1.3
1,815,242 - Dshi_1749 0.35 +0.4
1,815,351 - Dshi_1749 0.45 -0.3
1,815,374 - Dshi_1749 0.47 +0.5
1,815,412 - Dshi_1749 0.50 -1.3
1,815,570 + Dshi_1749 0.64 -1.5
1,815,592 - Dshi_1749 0.66 -1.9
1,815,619 - Dshi_1749 0.69 -3.8
1,815,645 + Dshi_1749 0.71 -0.8
1,815,755 - Dshi_1749 0.81 +1.2
1,815,755 - Dshi_1749 0.81 -0.4
1,816,132 + +0.5
1,816,135 - -1.9
1,816,240 - Dshi_1750 0.16 -0.9
1,816,258 + Dshi_1750 0.18 -1.8
1,816,463 - Dshi_1750 0.36 -1.8
1,816,532 + Dshi_1750 0.42 +2.2
1,816,634 - Dshi_1750 0.51 -0.7
1,816,685 - Dshi_1750 0.55 -3.7
1,816,821 - Dshi_1750 0.67 -2.1
1,816,875 + Dshi_1750 0.72 -0.1
1,816,875 + Dshi_1750 0.72 -3.1
1,816,875 + Dshi_1750 0.72 -2.7
1,817,345 + Dshi_1751 0.15 -0.6
1,817,388 - Dshi_1751 0.19 -2.6
1,817,508 + Dshi_1751 0.30 -0.1
1,817,898 - Dshi_1751 0.67 -2.1
1,817,960 - Dshi_1751 0.73 +0.3
1,818,070 + Dshi_1751 0.84 -0.1

Or see this region's nucleotide sequence