Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1552 and Dshi_1553 overlap by 4 nucleotides Dshi_1553 and Dshi_1554 overlap by 4 nucleotides Dshi_1554 and Dshi_1555 are separated by 69 nucleotides Dshi_1555 and Dshi_1556 are separated by 18 nucleotides
Dshi_1552: Dshi_1552 - type III effector Hrp-dependent outers (RefSeq), at 1,614,497 to 1,615,753
_1552
Dshi_1553: Dshi_1553 - class II aldolase/adducin family protein (RefSeq), at 1,615,750 to 1,616,400
_1553
Dshi_1554: Dshi_1554 - Hydroxypyruvate isomerase (RefSeq), at 1,616,397 to 1,617,161
_1554
Dshi_1555: Dshi_1555 - transcriptional regulator, XRE family (RefSeq), at 1,617,231 to 1,617,857
_1555
Dshi_1556: Dshi_1556 - AMP-dependent synthetase and ligase (RefSeq), at 1,617,876 to 1,619,435
_1556
Position (kb)
1616
1617
1618 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1615.404 kb on - strand, within Dshi_1552 at 1615.422 kb on - strand, within Dshi_1552 at 1615.746 kb on + strand at 1615.762 kb on - strand at 1616.163 kb on + strand, within Dshi_1553 at 1616.185 kb on + strand, within Dshi_1553 at 1616.204 kb on + strand, within Dshi_1553 at 1616.386 kb on + strand at 1616.827 kb on - strand, within Dshi_1554 at 1616.863 kb on - strand, within Dshi_1554 at 1617.043 kb on + strand, within Dshi_1554 at 1617.373 kb on + strand, within Dshi_1555 at 1617.496 kb on - strand, within Dshi_1555 at 1617.647 kb on + strand, within Dshi_1555 at 1617.689 kb on + strand, within Dshi_1555 at 1617.703 kb on + strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.711 kb on - strand, within Dshi_1555 at 1617.733 kb on - strand, within Dshi_1555 at 1617.886 kb on + strand at 1617.940 kb on + strand at 1617.984 kb on + strand at 1617.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 1,615,404 - Dshi_1552 0.72 -2.4 1,615,422 - Dshi_1552 0.74 +0.6 1,615,746 + -0.4 1,615,762 - -1.7 1,616,163 + Dshi_1553 0.63 -0.0 1,616,185 + Dshi_1553 0.67 -0.0 1,616,204 + Dshi_1553 0.70 +1.0 1,616,386 + -3.5 1,616,827 - Dshi_1554 0.56 -1.0 1,616,863 - Dshi_1554 0.61 +3.3 1,617,043 + Dshi_1554 0.84 +0.2 1,617,373 + Dshi_1555 0.23 -0.6 1,617,496 - Dshi_1555 0.42 +0.4 1,617,647 + Dshi_1555 0.66 -1.1 1,617,689 + Dshi_1555 0.73 -2.3 1,617,703 + Dshi_1555 0.75 -1.6 1,617,711 - Dshi_1555 0.77 -2.4 1,617,711 - Dshi_1555 0.77 -0.8 1,617,733 - Dshi_1555 0.80 +0.5 1,617,886 + -2.6 1,617,940 + +0.2 1,617,984 + -1.0 1,617,990 + -0.0
Or see this region's nucleotide sequence