Experiment: m.b. copper (II) chloride 0.64 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1506 and Dshi_1507 are separated by 125 nucleotides Dshi_1507 and Dshi_1508 are separated by 99 nucleotides Dshi_1508 and Dshi_1509 are separated by 39 nucleotides
Dshi_1506: Dshi_1506 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,566,319 to 1,567,473
_1506
Dshi_1507: Dshi_1507 - protein of unknown function DUF1153 (RefSeq), at 1,567,599 to 1,567,877
_1507
Dshi_1508: Dshi_1508 - two component transcriptional regulator, winged helix family (RefSeq), at 1,567,977 to 1,568,690
_1508
Dshi_1509: Dshi_1509 - DNA ligase, NAD-dependent (RefSeq), at 1,568,730 to 1,570,955
_1509
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1567.494 kb on + strand at 1567.526 kb on + strand at 1567.526 kb on + strand at 1567.571 kb on - strand at 1567.580 kb on - strand at 1567.580 kb on - strand at 1567.594 kb on - strand at 1567.594 kb on - strand at 1567.637 kb on - strand, within Dshi_1507 at 1567.661 kb on - strand, within Dshi_1507 at 1567.671 kb on - strand, within Dshi_1507 at 1567.706 kb on + strand, within Dshi_1507 at 1567.721 kb on + strand, within Dshi_1507 at 1567.729 kb on + strand, within Dshi_1507 at 1567.729 kb on - strand, within Dshi_1507 at 1567.737 kb on - strand, within Dshi_1507 at 1567.740 kb on + strand, within Dshi_1507 at 1567.939 kb on + strand at 1567.947 kb on - strand at 1567.947 kb on - strand at 1567.969 kb on - strand at 1568.027 kb on - strand at 1568.031 kb on + strand at 1568.045 kb on - strand at 1568.062 kb on + strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.123 kb on + strand, within Dshi_1508 at 1568.136 kb on - strand, within Dshi_1508 at 1568.149 kb on - strand, within Dshi_1508 at 1568.168 kb on - strand, within Dshi_1508 at 1568.188 kb on - strand, within Dshi_1508 at 1568.275 kb on - strand, within Dshi_1508 at 1568.338 kb on - strand, within Dshi_1508 at 1568.415 kb on - strand, within Dshi_1508 at 1568.486 kb on - strand, within Dshi_1508 at 1568.698 kb on + strand at 1568.699 kb on - strand at 1568.701 kb on + strand at 1568.819 kb on + strand at 1568.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM remove 1,567,494 + -1.9 1,567,526 + +0.1 1,567,526 + -0.8 1,567,571 - -1.9 1,567,580 - +2.2 1,567,580 - +0.9 1,567,594 - +1.2 1,567,594 - -0.5 1,567,637 - Dshi_1507 0.14 -1.6 1,567,661 - Dshi_1507 0.22 -0.0 1,567,671 - Dshi_1507 0.26 -0.2 1,567,706 + Dshi_1507 0.38 -0.0 1,567,721 + Dshi_1507 0.44 -0.8 1,567,729 + Dshi_1507 0.47 -0.4 1,567,729 - Dshi_1507 0.47 +3.3 1,567,737 - Dshi_1507 0.49 +1.0 1,567,740 + Dshi_1507 0.51 -1.3 1,567,939 + -2.9 1,567,947 - +1.6 1,567,947 - +1.8 1,567,969 - -0.2 1,568,027 - -1.0 1,568,031 + -1.4 1,568,045 - -1.6 1,568,062 + Dshi_1508 0.12 +0.3 1,568,068 - Dshi_1508 0.13 -0.3 1,568,068 - Dshi_1508 0.13 -0.7 1,568,123 + Dshi_1508 0.20 +1.1 1,568,136 - Dshi_1508 0.22 -0.7 1,568,149 - Dshi_1508 0.24 +3.1 1,568,168 - Dshi_1508 0.27 +0.6 1,568,188 - Dshi_1508 0.30 -1.3 1,568,275 - Dshi_1508 0.42 -0.0 1,568,338 - Dshi_1508 0.51 +0.9 1,568,415 - Dshi_1508 0.61 +0.9 1,568,486 - Dshi_1508 0.71 -3.9 1,568,698 + -0.8 1,568,699 - -0.6 1,568,701 + -0.0 1,568,819 + -0.9 1,568,829 + -0.4
Or see this region's nucleotide sequence