Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1508

Experiment: m.b. copper (II) chloride 0.64 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1506 and Dshi_1507 are separated by 125 nucleotidesDshi_1507 and Dshi_1508 are separated by 99 nucleotidesDshi_1508 and Dshi_1509 are separated by 39 nucleotides Dshi_1506: Dshi_1506 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq), at 1,566,319 to 1,567,473 _1506 Dshi_1507: Dshi_1507 - protein of unknown function DUF1153 (RefSeq), at 1,567,599 to 1,567,877 _1507 Dshi_1508: Dshi_1508 - two component transcriptional regulator, winged helix family (RefSeq), at 1,567,977 to 1,568,690 _1508 Dshi_1509: Dshi_1509 - DNA ligase, NAD-dependent (RefSeq), at 1,568,730 to 1,570,955 _1509 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1567.494 kb on + strandat 1567.526 kb on + strandat 1567.526 kb on + strandat 1567.571 kb on - strandat 1567.580 kb on - strandat 1567.580 kb on - strandat 1567.594 kb on - strandat 1567.594 kb on - strandat 1567.637 kb on - strand, within Dshi_1507at 1567.661 kb on - strand, within Dshi_1507at 1567.671 kb on - strand, within Dshi_1507at 1567.706 kb on + strand, within Dshi_1507at 1567.721 kb on + strand, within Dshi_1507at 1567.729 kb on + strand, within Dshi_1507at 1567.729 kb on - strand, within Dshi_1507at 1567.737 kb on - strand, within Dshi_1507at 1567.740 kb on + strand, within Dshi_1507at 1567.939 kb on + strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.969 kb on - strandat 1568.027 kb on - strandat 1568.031 kb on + strandat 1568.045 kb on - strandat 1568.062 kb on + strand, within Dshi_1508at 1568.068 kb on - strand, within Dshi_1508at 1568.068 kb on - strand, within Dshi_1508at 1568.123 kb on + strand, within Dshi_1508at 1568.136 kb on - strand, within Dshi_1508at 1568.149 kb on - strand, within Dshi_1508at 1568.168 kb on - strand, within Dshi_1508at 1568.188 kb on - strand, within Dshi_1508at 1568.275 kb on - strand, within Dshi_1508at 1568.338 kb on - strand, within Dshi_1508at 1568.415 kb on - strand, within Dshi_1508at 1568.486 kb on - strand, within Dshi_1508at 1568.698 kb on + strandat 1568.699 kb on - strandat 1568.701 kb on + strandat 1568.819 kb on + strandat 1568.829 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.64 mM
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1,567,494 + -1.9
1,567,526 + +0.1
1,567,526 + -0.8
1,567,571 - -1.9
1,567,580 - +2.2
1,567,580 - +0.9
1,567,594 - +1.2
1,567,594 - -0.5
1,567,637 - Dshi_1507 0.14 -1.6
1,567,661 - Dshi_1507 0.22 -0.0
1,567,671 - Dshi_1507 0.26 -0.2
1,567,706 + Dshi_1507 0.38 -0.0
1,567,721 + Dshi_1507 0.44 -0.8
1,567,729 + Dshi_1507 0.47 -0.4
1,567,729 - Dshi_1507 0.47 +3.3
1,567,737 - Dshi_1507 0.49 +1.0
1,567,740 + Dshi_1507 0.51 -1.3
1,567,939 + -2.9
1,567,947 - +1.6
1,567,947 - +1.8
1,567,969 - -0.2
1,568,027 - -1.0
1,568,031 + -1.4
1,568,045 - -1.6
1,568,062 + Dshi_1508 0.12 +0.3
1,568,068 - Dshi_1508 0.13 -0.3
1,568,068 - Dshi_1508 0.13 -0.7
1,568,123 + Dshi_1508 0.20 +1.1
1,568,136 - Dshi_1508 0.22 -0.7
1,568,149 - Dshi_1508 0.24 +3.1
1,568,168 - Dshi_1508 0.27 +0.6
1,568,188 - Dshi_1508 0.30 -1.3
1,568,275 - Dshi_1508 0.42 -0.0
1,568,338 - Dshi_1508 0.51 +0.9
1,568,415 - Dshi_1508 0.61 +0.9
1,568,486 - Dshi_1508 0.71 -3.9
1,568,698 + -0.8
1,568,699 - -0.6
1,568,701 + -0.0
1,568,819 + -0.9
1,568,829 + -0.4

Or see this region's nucleotide sequence